Re: iterating over slices in volume?

Posted by Kenneth Sloan-2 on
URL: http://imagej.273.s1.nabble.com/iterating-over-slices-in-volume-tp5018309p5018314.html

Thanks - I missed the reply.

> On Mar 15, 2017, at 10:47, Curtis Rueden <[hidden email]> wrote:
>
> Hi Kenneth,
>
>> I apologize if this is a repeat - I didn’t see it post and I haven’t
>> seen a reply.
>
> You can search the ImageJ list archives by visiting
> https://search.imagej.net/, typing the subject of your last post in quotes
> (which was "adjust B&C o every slice of a volume"), and then clicking the
> big green "ImageJ" button in the "Forum + Lists" section. Then you will see
> that your previous mail did indeed post, and you even got a reply from
> Michael Schmid:
>
> http://imagej.1557.x6.nabble.com/adjust-B-amp-C-o-every-slice-of-a-volume-tt5018289.html#a5018300
>
> Regards,
> Curtis
>
>
> --
> Curtis Rueden
> LOCI software architect - https://loci.wisc.edu/software
> ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
> Did you know ImageJ has a forum? http://forum.imagej.net/
>
>
> On Wed, Mar 15, 2017 at 10:14 AM, Kenneth Sloan <[hidden email]>
> wrote:
>
>> I apologize if this is a repeat - I didn’t see it post and I haven’t seen
>> a reply.  I think this is easy.
>>
>> I need to iterate a process over all slices of a volume (the current
>> candidate is to adjust Brightness&Contrast.  Can someone please provide a
>> pointer on how to do this?
>>
>> In processing these volumes, I first handle individual slices as
>> individual images - but they are then aligned and cropped and assembled
>> into a volume.  The cropping changes enough things so that another pass of
>> adjusting brightness & contrast is called for.  I’d like to avoid unpacking
>> the volume into a collection of separate files, using Batch Processor to
>> adjust them, and then re-assemble.  Is there a way to iterate through the
>> slices “in place”?
>>
>> —
>> Kenneth Sloan
>> [hidden email]
>>
>>
>>
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>
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> ImageJ mailing list: http://imagej.nih.gov/ij/list.html


Kenneth Sloan
[hidden email]




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