Re: Easy problem: Batch processing multiple output photos

Posted by ctrueden on Apr 10, 2017; 8:33pm
URL: http://imagej.273.s1.nabble.com/Easy-problem-Batch-processing-multiple-output-photos-tp5018487p5018495.html

Hi,

Maybe you want to use the more flexible "Process Folder" macro template?

See:
http://imagej.net/Batch_Processing#Flexible_option

Then you can do/save whatever you want for each loop iteration.

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - https://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Mon, Apr 10, 2017 at 3:00 AM, Tattlelord <[hidden email]>
wrote:

> Hi all,
>
> I am very new at ImageJ. So i think I have a very easy problem. As follows:
>
> I have several images of leaves which are partly green and partly red. I
> have a simple script that analyses the area of both colors. I copied this
> into the batch processing box (process>batch>macro) (see code below).
>
> I selected an input and output folder for the images. However, it only
> saves
> the images analyzed in the first block "bladoppervlakte" (leaf surface)
> images. It does not save the "rode delen" (red parts) images. How can I
> adjust to let it save both images in the output folder? Or perhaps ion two
> seperate folders.
>
> Thank you :)
>
> a=getTitle();
>
> run("RGB Stack");
> run("Stack to Images");
>
> selectWindow("Blue");
> rename(a+" bladoppervlakte");
> setThreshold(0, 100);
> run("Analyze Particles...", "size=10000-Infinity circularity=0.00-1.00
> show=Nothing display summarize");
>
> selectWindow("Green");
> rename(a+" rode delen");
> setThreshold(0, 20);
> run("Analyze Particles...", "size=250-Infinity circularity=0.00-1.00
> show=Nothing display summarize");
>
> selectWindow("Red");
> run("Close");
>
>
>
>
>
> --
> View this message in context: http://imagej.1557.x6.nabble.
> com/Easy-problem-Batch-processing-multiple-output-photos-tp5018487.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html