Re: Grid Stitching - no output image

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URL: http://imagej.273.s1.nabble.com/Grid-Stitching-no-output-image-tp5018380p5018563.html

Hi Mike,

in this email I wanted to address your problem. It does not find overlapping tiles since the determined correlation between both:


10000.tif[1] <- 10001.tif[1]: (1037.8536, -1.7621746) correlation (R)=0.29953933 (144 ms)

is below the correlation threshold of 0.3 that you set in the parameters, thus it trashes this connection leaving you with only the first input tile.

So to keep it just try lowering the threshold - but I assume it might come up with a wrong solution.

Hope this helps anyways a bit?

All the best,
Stephan
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Dr. Stephan Preibisch
Group Leader

Berlin Institute for Medical Systems Biology (BIMSB), Max Delbrück Center for Molecular Medicine (MDC)
Building 89, 1.08b

email: [hidden email]<mailto:[hidden email]>
web: http://preibischlab.mdc-berlin.de

On 13. Apr 2017, at 16:52, MChapman <[hidden email]<mailto:[hidden email]>> wrote:

Hi Stephan,

Are there any other changes that you are making to the stitching program for
"BigStitcher" besides the ability to stitch larger mosaics?

aka - Are you looking into fixing the other issues that were present with
the grid collection stitching program?

I have been trying to get a hold of you with the data set that we had talked
about around Christmas on the mailing list.  I sent a few emails to the one
you have listed on your site and a PM through the ImageJ forum but never got
any response.  The mailing list has been not letting me send out anything
for a few months now.

Here is the link to the dataset if you are still interested:
https://drive.google.com/open?id=0B9llW4iht0nZSW1ZUXl5eWdZZDQ

I really like your stitching program (and use it everyday), and I would like
to help to improve it any way that I can.

Thanks!
Mike Chapman



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