Re: Grid Stitching - no output image

Posted by MChapman on
URL: http://imagej.273.s1.nabble.com/Grid-Stitching-no-output-image-tp5018380p5018565.html

Stephan,

Thanks for the responses, and I look forward to trying out BigStitcher!

I recognize that the reason that stitch failed was because there was a low correlation between the two images, and I have found ways fix those issues.

The reason that I sent this dataset to you though is that I think there is something peculiar going on when grid collection/stitching is initializing the correlations which is causing the first tiles to drop out in the larger stitches.  

I literally have tens of thousands of examples of this error, and there error will go away by eliminating a portion of the images in the stitch (cutting out everything but the first few rows) and running the same stitching parameters.  

It doesn't make sense to me why it would behave differently in the initial correlation measurements with the exact same first two images and stitching parameters.

Mike