Re: 3D Viewer plugin time lapse

Posted by ctrueden on May 11, 2017; 7:50pm
URL: http://imagej.273.s1.nabble.com/3D-Viewer-plugin-time-lapse-tp5018612p5018709.html

Hi Dave,

> I tried it in ImageJ and it worked perfectly after it upgraded its
> Java3D.  But it still doesn’t work in Fiji.  I have contacted the Fiji
> developers to let them know.

It is an issue with Java 8 vs. Java 6, and therefore Java 3D 1.6 vs. Java
3D 1.5.

There are some technical details here:
https://imagej.net/Java_8#About_Java_3D

If you want it to work in Fiji, then please download a Life-Line version of
Fiji from:
    https://imagej.net/Fiji/Downloads#Life-Line_Fiji_versions

These old versions of Fiji ship with Java 6, and should behave similarly to
how the 3D Viewer behaves in plain ImageJ 1.x.

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - https://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Wed, Apr 26, 2017 at 3:59 PM, Knecht, David <[hidden email]>
wrote:

> Thanks for the reply.  I tried it in ImageJ and it worked perfectly after
> it upgraded its Java3D.  But it still doesn’t work in Fiji.  I have
> contacted the Fiji developers to let them know.  Dave
>
> Dr. David Knecht
> Professor , Department of Molecular and Cell Biology
> University of Connecticut
> 91 N. Eagleville Rd.
> U-3125
> Storrs, CT 06269-3125
> 860-486-2200
>
> > On Apr 26, 2017, at 2:10 PM, qian chen <[hidden email]> wrote:
> >
> > The 3D viewer does work for us with both Z- and time-series rendered.
> Ours
> > is ImageJ 1.51g with Java 1.6.0_20.
> > Best,
> > Qian
> >
> > Qian Chen, Ph.D.
> > Assistant Professor
> > University of Toledo
> > Department of Biological Sciences, MS: 6012801 West Bancroft STToledo,
> > Ohio 43606
> >
> > Office: Wolfe Hall RM4267
> > Phone: [phone] <(419)%20530-1593>https://
> qian-chen-gdrc.squarespace.com/
> >
> >
> > On Wed, Apr 26, 2017 at 2:05 PM, qian chen <[hidden email]> wrote:
> >
> >> The 3D viewer does work for us with both Z- and time-series rendered.
> Ours
> >> is ImageJ 1.51g with Java 1.6.0_20.
> >> Best,
> >> Qian
> >>
> >> Qian Chen, Ph.D.
> >> Assistant Professor
> >> University of Toledo
> >> Department of Biological Sciences, MS: 6012801 West Bancroft STToledo,
> Ohio 43606
> >>
> >> Office: Wolfe Hall RM4267
> >> Phone: [phone] <(419)%20530-1593>https://
> qian-chen-gdrc.squarespace.com/
> >>
> >>
> >> On Wed, Apr 26, 2017 at 12:05 PM, Knecht, David <[hidden email]
> >
> >> wrote:
> >>
> >>> We have tried to use 3D Viewer to render a time lapse dataset.  The
> >>> manual says it should work, and when the hyper stack is opened, there
> is a
> >>> first time point box, but you can’t change that from 0 and it only
> renders
> >>> the first z stack of the time series.  Has anyone gotten this to work?
> >>> Thanks- Dave
> >>>
> >>> Dr. David Knecht
> >>> Professor , Department of Molecular and Cell Biology
> >>> University of Connecticut
> >>> 91 N. Eagleville Rd.
> >>> U-3125
> >>> Storrs, CT 06269-3125
> >>> 860-486-2200
> >>>
> >>>
> >>> --
> >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >>>
> >>
> >>
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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