Import image sequence of unequal size in TrackEM

Posted by Jeremias Brand on
URL: http://imagej.273.s1.nabble.com/Import-image-sequence-of-unequal-size-in-TrackEM-tp5018834.html

Dear ImageJ List users,

I have a stack of .dm3 images from serial block face SEM imaging. Since
aquisition time is limited by image size I start aquisition with small
image size (4500px x 4500px) and once my object becomes bigger I adjust
to larger images (up to 8000px x 8000px).
I now want to import these images as a sequence with one image per z
layer. To do this I followed the trackEM tutorial and tried:

Import -> Import Sequences as grid...; then I set number of rows: 1,
number of columns: 1, number of slices: <number of images I am importing>.

TrackEm then starts importing but as soon as the image dimensions change
I get this error:

Size mismatch! (see attached image)

Selecting either 'ignore all' or 'fix all' both do not resolve the
issue, because the error apears for every slice that does not match the
original image, which are too many to click the message individually
(about 800 images).

Is there any other way of importing a sequence of images of unequal size
into TrackEM?

Thank you for your help,

Jeremias Brand

PhD Student
Evolutionary Biology
Department of Environmental Sciences
University of Basel






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