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Re: Stack control for turning individual slices on and off?

Posted by Christian Goosmann-2 on Jun 29, 2017; 10:50am
URL: http://imagej.273.s1.nabble.com/Stack-control-for-turning-individual-slices-on-and-off-tp5018996p5018997.html

Hi Andy
it sounds like you want to load your multiband image as a composite
stack in Fiji. If it doesn't automatically import as composite stack,
you have to import the single band (or channel) images as a simple stack
and use the 'Image>Hyperstacks>Stack to Hyperstack...' command. You end
up with a window with a slider to go through the channels. Open the
'channels tool' by hitting ctl+alt "z". Then you can set the upper
dropdown item in the tool to 'Composite' view. This shows you an overlay
of the channels and you can uncheck the ones you don't want to include.
You can pick different color luts for the individual channels, the
hyperstack is colorcoded in a default manner at the beginning.
Hth
Christian

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Christian Goosmann
Mikroskopie
Max-Planck-Institut für Infektionsbiologie
Campus Charité Mitte
Charitéplatz 1
10117 Berlin
Tel.: +49 30 28460 388

Andy Schofield wrote:

> Hi All,
>
> I have a multiband, 16-bit per band satellite Tiff image and wondered if there are any tools/plugins available in Fiji that enables easy control over switching slices on and off so I can assess the alignment between the different bands (such as the layer control tool in Photoshop etc. for instance)?
>
> Regards
> Andy
>
> BTW, in s similar vein, is there a tool/plugin that can manage the selective manual reordering of slices in a stack? I looked at the Image->Stacks->Tools->Stack Sorter but this seemed to be add/remove/duplicate or reverse/order by label only. I ended up renaming each slice to use th reorder by label but wondered if there was plugin that allows the idea of 'Move current slice to slice 6' for instance?
>
>
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