Re: error importing ND2 files

Posted by ctrueden on Aug 08, 2017; 9:34pm
URL: http://imagej.273.s1.nabble.com/error-importing-ND2-files-tp5019181p5019182.html

Hi Richard,

See:
  http://forum.imagej.net/t/fiji-and-bioformats-conflicting-jars/5736

In short:
* If you are using Java 6, please delete
jars/bio-formats/formats-common-5.1.10.jar. You probably also want to
enable the Fiji-Legacy update site.
* If you are using Java 8, please enable the Java-8 update site.

See also:
  https://imagej.net/Java_8

I have plans to make the Updater fix things automatically along these
lines, but will not have time to complete that work till October.

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - https://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Tue, Aug 8, 2017 at 11:19 AM, Cole, Richard W (HEALTH) <
[hidden email]> wrote:

> Folks,
>
> Recently converted to elements software.  I am getting the following on
> import:  any sugestions????
>
> parsing block 'ND2 FILEMAP ' 99%
> Exception in thread "DrawAndDrop" java.lang.NoSuchMethodError:
> loci.common.DataTools.parseDouble(Ljava/lang/String;)Ljava/lang/Double;
>         at loci.formats.in.ND2Handler.parseKeyAndValue(ND2Handler.
> java:850)
>         at loci.formats.in.NativeND2Reader.parseText(
> NativeND2Reader.java:2377)
>         at loci.formats.in.NativeND2Reader.initFile(
> NativeND2Reader.java:958)
>         at loci.formats.FormatReader.setId(FormatReader.java:1397)
>         at loci.formats.DelegateReader.setId(DelegateReader.java:291)
>         at loci.formats.ImageReader.setId(ImageReader.java:839)
>         at io.scif.bf.BioFormatsFormat$Parser.typedParse(
> BioFormatsFormat.java:431)
>         at io.scif.bf.BioFormatsFormat$Parser.typedParse(
> BioFormatsFormat.java:413)
>         at io.scif.AbstractParser.parse(AbstractParser.java:253)
>         at io.scif.AbstractParser.parse(AbstractParser.java:336)
>         at io.scif.AbstractParser.parse(AbstractParser.java:52)
>         at io.scif.AbstractReader.setSource(AbstractReader.java:270)
>         at io.scif.services.DefaultInitializeService.initializeReader(
> DefaultInitializeService.java:90)
>         at io.scif.img.ImgOpener.createReader(ImgOpener.java:561)
>         at io.scif.img.ImgOpener.openImgs(ImgOpener.java:144)
>         at io.scif.services.DefaultDatasetIOService.open(
> DefaultDatasetIOService.java:126)
>         at io.scif.services.DefaultDatasetIOService.open(
> DefaultDatasetIOService.java:111)
>         at io.scif.io.DatasetIOPlugin.open(DatasetIOPlugin.java:75)
>         at io.scif.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)
>         at net.imagej.legacy.plugin.DefaultLegacyOpener.open(
> DefaultLegacyOpener.java:136)
>         at net.imagej.legacy.DefaultLegacyHooks.interceptDragAndDropFile(
> DefaultLegacyHooks.java:363)
>         at ij.plugin.DragAndDrop.openFile(DragAndDrop.java)
>         at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)
>         at java.lang.Thread.run(Thread.java:745)
>
> Richard Cole
> Research Scientist V
> Director: Advanced Light Microscopy & Image Analysis Core
> Wadsworth Center
>
> Research Assistant Professor
> Dept. of Biomedical Sciences
> School of Public Health State University of New York
>
> 120 New Scotland Avenue, Albany N.Y. 12208
> 518-474-7048 Phone
> 518-408-1730 Fax
>
> Website http://www.wadsworth.org/research/cores/alm
>  twitter.com/microscopejock
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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