Re: error on import of ND2 files

Posted by ctrueden on Aug 10, 2017; 2:45pm
URL: http://imagej.273.s1.nabble.com/error-on-import-of-ND2-files-tp5019185p5019194.html

Hi Rich,

In addition to Brian's comments: is it possible that you either:
A) Have the Nikon ND2 plugin installed [1]; or
B) Turned on windowless import for ND2 files [2]?

Regards,
Curtis

[1] https://imagej.net/plugins/nd2-reader.html
[2] Plugins > Bio-Formats > Bio-Formats Plugins Configuration, Formats tab,
Nikon ND2, ensure Windowless option is unchecked.


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Curtis Rueden
LOCI software architect - https://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
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On Thu, Aug 10, 2017 at 9:31 AM, Brian Northan <[hidden email]> wrote:

> Hi Rich
>
> I downloaded your file and I think I was able to load it correctly.  I
> simply went to "file->open" and it automatically started the bio-formats
> plugin.  It gave me the option of opening 2 series, both were 11 frames, 10
> timepoints, and seemed to open fine.
>
> Does it automatically use bio-formats when you try to open??  If not try
> going to  "File->import->bioformats", instead of just "file->open".
>
> On Wed, Aug 9, 2017 at 12:54 PM, Cole, Richard W (HEALTH) <
> [hidden email]> wrote:
>
> > Dear imagers,
> >
> > The file opens now, however, it does not open correctly.  The file is a
> T,
> > XY, Z file but, Fiji opens only one of the XY positions.
> >  There are no errors on opening.  Any ideas?
> > File location: anonymous FTP site ftp://ftp.wadsworth.org/pub/rcole/ND2/
> >
> > Cheers
> >
> > Rich
> >
> >
> > Richard Cole
> > Research Scientist V
> > Director: Advanced Light Microscopy & Image Analysis Core
> > Wadsworth Center
> >
> > Research Assistant Professor
> > Dept. of Biomedical Sciences
> > School of Public Health State University of New York
> >
> > 120 New Scotland Avenue, Albany N.Y. 12208
> > 518-474-7048 Phone
> > 518-408-1730 Fax
> > [core brand]
> > Website http://www.wadsworth.org/research/cores/alm
> > [twitter-128] twitter.com/microscopejock
> >
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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