Re: Shortening Z-Stacks

Posted by Jacob Keller-2 on Aug 24, 2017; 3:24pm
URL: http://imagej.273.s1.nabble.com/Shortening-Z-Stacks-tp5019255p5019263.html

Got it--those guidelines make a lot of sense, and will try to follow them
in the future. I've attached a really-minimized data set (1 MB) hereto for
an MCVE. Binning, interestingly enough, does work in xy, but not z. When
this data set is cut to one timepoint, z-binning works, so there might be
some confusion between z/t. Maybe binning should ask explicitly for all
(xyzt? maybe even c too?)

Jacob

On Thu, Aug 24, 2017 at 10:45 AM, Curtis Rueden <[hidden email]> wrote:

> Hi Jacob,
>
> > The bin command is not working on them, perhaps because they are
> > timelapses. Is this potentially a bug?
>
> It would help greatly to have a Minimal, Complete, Verifiable Example
> (MCVE) illustrating the issue. For guidance, see this article:
> http://imagej.net/Bug_reporting_best_practices
>
> Regards,
> Curtis
>
> --
> Curtis Rueden
> LOCI software architect - https://loci.wisc.edu/software
> ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
> Did you know ImageJ has a forum? http://forum.imagej.net/
>
>
> On Wed, Aug 23, 2017 at 5:54 PM, Jacob Keller <[hidden email]>
> wrote:
>
> > Dear Imagers,
> >
> > I have some .czi z-stack timelapses which are 40-60 slices in z, but it
> > would be nice to merge them down to, say, 10-20 slices by binning
> adjacent
> > slices. The bin command is not working on them, perhaps because they are
> > timelapses. Is this potentially a bug?
> >
> > All the best,
> >
> > Jacob Keller
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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