Re: batch processes

Posted by Ellen Arena-2 on Sep 05, 2017; 4:36pm
URL: http://imagej.273.s1.nabble.com/batch-processes-tp5019323p5019325.html

I forgot to link you to the Batch page… https://imagej.net/Batch_Processing <https://imagej.net/Batch_Processing>

So you can always batch without the need for writing your own scripts using the ‘easy’ interface… but with scripting - obviously you have more control, etc.

I hope this all helps!

Ellen

> On Sep 5, 2017, at 10:33 AM, Edoardo D'Imprima <[hidden email]> wrote:
>
> Dear all,
>
> I am a very beginner with ImageJ and Java scripting. I would like to perform some operations in series on dm4 images like enhancing the contrast of such a percentage of saturated pixels, applying image normalisation, smoothing the result and save the image as 8 bit instead of 32. All these steps running in batch over a list of files.
>
> Is there any template script with these or similar command which I can use to start playing with it.
>
> Many thanks in advance,
>
> Edoardo
> ---------------------------------------------------
> Edoardo D'Imprima
> PhD Student
> Max Planck Institute of Biophysics
> Structural Biology Department
> Max-von-Laue Straße 3
> 60438 Frankfurt am Main
> Germany
>
> Tel: [phone]
>
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