Re: Segmentation Issue to resolve

Posted by anusuya pal on Sep 11, 2017; 6:38pm
URL: http://imagej.273.s1.nabble.com/Segmentation-Issue-to-resolve-tp5019339p5019355.html

Thanks a lot.  I have tried both the segmentation but it didn't work well.
So, I am thinking in a different direction and have given a new post. I
just hope that will be easier to solve.

Thanks
Anu



On 11-Sep-2017 2:19 PM, "Curtis Rueden" <[hidden email]> wrote:

Hi Anu,

I tried a few strategies with your image, but it seems very difficult. I
was not able to produce a good segmentation with Trainable Weka
Segmentation [1] nor with Morphological Segmentation [2]. The latter seems
more promising than the former, but the contrast between your small
interior regions and larger regions along the perimeter makes a unified
segmentation very challenging.

[image: Inline image 2][image: Inline image 1]

You could try posting on the ImageJ Forum (http://forum.imagej.net/); maybe
someone there has further suggestions or workflows for you to try.

Regards,
Curtis

[1] https://imagej.net/TWS
[2] https://imagej.net/Morphological_Segmentation

--
Curtis Rueden
LOCI software architect - https://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Fri, Sep 8, 2017 at 6:08 PM, anusuya pal <[hidden email]> wrote:

> Hello,
>
> I am very new in this field and I am wondering if somebody can help me to
> figure out about the segmentation of each domain. I have converted the
> image into 8bit and I want to separate the different region of interest to
> find the mean intensity for each region. For convenience, I am attaching
> the image.
>
> Thanks
> Anu
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html