Re: large files

Posted by Ewing James on
URL: http://imagej.273.s1.nabble.com/Re-large-files-tp5019567p5019576.html

Thanks for the tip.  
I’m trying to register two files, the first an undistorted image a rat brain, and the second a distorted tissue slice of approximately the same slice. I put the two files are on box.com <http://box.com/>, with the link
https://app.box.com/s/cfrh9iwh1i7frjtz40j0n46icbhm1rke <https://app.box.com/s/cfrh9iwh1i7frjtz40j0n46icbhm1rke>

The first file is tagged slice.tif, and the second is PS02C_H&E_1x.jpg.tif. First file is an MRI image, second is an H&E tissue slice.  I want to morph the H&E slide to the MRI.

In Fiji, I tried Plugins>Registration>Register Virtual Stack Slices, and bUnbwarpJ, with no apparent success.  Plugins>Landmarks>Name Landmarks and Register seemed like it should work, but generated a map of 0’s with the legend at the top saying “Transformed (33%)” when I tried the thin-plate spline registration algorithm. I would bet that there are a number of users out there who have solved this problem.  Any hints?  Thanks in advance.

- Jim Ewing

> On Oct 19, 2017, at 11:29 AM, Brandon Hurr <[hidden email]> wrote:
>
> Put them on Dropbox or Google Drive and provide a public link in your
> message.
>
> How big are we talking? gDrive takes up to 2 GB file size I believe.
>
> HTH,
> B
>
> On Thu, Oct 19, 2017 at 8:04 AM, Ewing James <[hidden email]>
> wrote:
>
>> Dear List -
>>
>> I have two large files that I’d like some advice on co-registering.  Is
>> there some place that I can drop these files?  The list server won’t let me
>> attach either one to this message.
>>
>> - Jim Ewing
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>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>
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