Posted by
duerna on
Nov 11, 2017; 1:42pm
URL: http://imagej.273.s1.nabble.com/macro-with-many-stacks-tp5019684.html
Dear all,
With some kindly help, I could open many sub-folder as many stacks now,
but I could not go further, I want analysis all the stacks and save the
result.
Please see the code:
-----------------------------------------------------------------
input = getDirectory("choose the input directory");
output = getDirectory("choose the output directory");
listdir = getFileList( input );
for (i = 0; i < listdir.length; i++) {
path = input + listdir[i];
if ( File.isDirectory( path ) ) {
run("Image Sequence...", "open=" + path + " sort");
}
}
------------------------------------------------------------------------------
------------------------------------------------------------------------------
run("Enhance Contrast", "saturated=0.35");
run("Apply LUT", "stack");
setAutoThreshold("Otsu dark");
setThreshold(60, 255);
run("wrMTrck ", "minsize=50 maxsize=10000 maxvelocity=300 maxareachange=100
mintracklength=0 bendthreshold=0 binsize=0 saveresultsfile showpathlengths
showlabels showpositions showpaths showsummary roundcoord smoothing
plotbendtrack rawdata=1 benddetect=0 fps=0 backsub=0 threshmode=Otsu
fontsize=50 * save=[" + output + file + "]")*
----------------------------------------------------------------------------------------------------------------
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Between the double dotline, is what I want to deal with my stacks,
however, I could only analysis the last stacks, and could not save the
analysis .txt data.
would you please help me ?
I have a lot of stacks, more than hunders, I need macro to save me.
Thank you in advance.
Best regards.
Duerna
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