Re: ImageJ version of FogBank?

Posted by Gabriel Landini on
URL: http://imagej.273.s1.nabble.com/ImageJ-version-of-FogBank-tp5019690p5019691.html

On Sunday, 12 November 2017 07:21:29 GMT [hidden email] wrote:

> A bit over a year ago, there was a thread that mentioned FogBank (for
> segmentation of phase images)
> https://isg.nist.gov/deepzoomweb/resources/csmet/pages/fogbank_segmentation/
> fogbank_segmentation.html
>
> and
> https://list.nih.gov/cgi-bin/wa.exe?A2=ind1608&L=IMAGEJ&P=R12059&1=IMAGEJ&9=
> A&J=on&d=No+Match%3BMatch%3BMatches&z=4
>
> Since then, has anyone ported this to ImageJ ?

Hi Aryeh,
I remember at the time having a look at the paper.
It reminds me of the marker-controlled segmentation:
https://uk.mathworks.com/help/images/examples/marker-controlled-watershed-segmentation.html

The fogbank paper seems to use the dark regions as seeds and some detectable
cell boundaries as barriers, which is somewhat similar to what the above does.
There might be other differences, but in the absence of plugins, maybe the
above is easier to implement?

Cheers

Gabriel

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html