Re: ImageJ version of FogBank?

Posted by Aryeh Weiss on
URL: http://imagej.273.s1.nabble.com/ImageJ-version-of-FogBank-tp5019690p5019693.html

On 12/11/2017 13:58, Gabriel Landini wrote:

> On Sunday, 12 November 2017 07:21:29 GMT [hidden email] wrote:
>> A bit over a year ago, there was a thread that mentioned FogBank (for
>> segmentation of phase images)
>> https://isg.nist.gov/deepzoomweb/resources/csmet/pages/fogbank_segmentation/
>> fogbank_segmentation.html
>>
>> and
>> https://list.nih.gov/cgi-bin/wa.exe?A2=ind1608&L=IMAGEJ&P=R12059&1=IMAGEJ&9=
>> A&J=on&d=No+Match%3BMatch%3BMatches&z=4
>>
>> Since then, has anyone ported this to ImageJ ?
> Hi Aryeh,
> I remember at the time having a look at the paper.
> It reminds me of the marker-controlled segmentation:
> https://uk.mathworks.com/help/images/examples/marker-controlled-watershed-segmentation.html
>
> The fogbank paper seems to use the dark regions as seeds and some detectable
> cell boundaries as barriers, which is somewhat similar to what the above does.
> There might be other differences, but in the absence of plugins, maybe the
> above is easier to implement?
>

Hi Gabriel,

Thanks for your reply. I agree that they probably based it on marker
controlled segmentation, combined whatever borders could be detected. I
figure that they already dealt with various optimizations that these
things often need, so I was hoping to run FogBank before doing it myself.

Best regards
--aryeh

--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: [phone]

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