cannot save summary file in macro

Posted by atyagiaa on
URL: http://imagej.273.s1.nabble.com/cannot-save-summary-file-in-macro-tp5019752.html

Hi,

Please help in making following code work to save summary that involve cell
count, the macro code as follows:

I have many images of cells, i want to count cell number for cells in
different images, the problem here is
1. I can see the summary display for individual file name, but that can not
save in one slice of summary file, please suggest what to do. I want to
compile all to one file so that i can save them as excel file.
<http://imagej.1557.x6.nabble.com/file/t381858/first-window.png>
2. I can save results easily as summary. the following file can be saved
easily.
<http://imagej.1557.x6.nabble.com/file/t381858/second-window.jpg>

The code is as follows:

run("Subtract Background...", "rolling=12 light");
setAutoThreshold("Default");
//run("Threshold...");
setOption("BlackBackground", false);
run("Convert to Mask");
run("Close");
run("Fill Holes");
run("Watershed");
run("Convert to Mask");
run("Analyze Particles...", "size=200-Infinity show=Outlines display clear
include summarize add");
run("Close");
selectWindow("Results");
saveAs("Results", homedir + File.separator +  "summary.csv");
close();

Please suggest the solution for this problem
Thanks in advance

Abhi



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