Re: cannot save summary file in macro

Posted by Herbie on Dec 11, 2017; 6:27pm
URL: http://imagej.273.s1.nabble.com/cannot-save-summary-file-in-macro-tp5019752p5019753.html

This is a cross-post from the IJ-forum:
<http://forum.imagej.net/t/cannot-save-macro-images/8235?u=herbie>


Am 11.12.17 um 19:08 schrieb atyagiaa:

> Hi,
>
> Please help in making following code work to save summary that involve cell
> count, the macro code as follows:
>
> I have many images of cells, i want to count cell number for cells in
> different images, the problem here is
> 1. I can see the summary display for individual file name, but that can not
> save in one slice of summary file, please suggest what to do. I want to
> compile all to one file so that i can save them as excel file.
> <http://imagej.1557.x6.nabble.com/file/t381858/first-window.png>
> 2. I can save results easily as summary. the following file can be saved
> easily.
> <http://imagej.1557.x6.nabble.com/file/t381858/second-window.jpg>
>
> The code is as follows:
>
> run("Subtract Background...", "rolling=12 light");
> setAutoThreshold("Default");
> //run("Threshold...");
> setOption("BlackBackground", false);
> run("Convert to Mask");
> run("Close");
> run("Fill Holes");
> run("Watershed");
> run("Convert to Mask");
> run("Analyze Particles...", "size=200-Infinity show=Outlines display clear
> include summarize add");
> run("Close");
> selectWindow("Results");
> saveAs("Results", homedir + File.separator +  "summary.csv");
> close();
>
> Please suggest the solution for this problem
> Thanks in advance
>
> Abhi
>
>
>
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>
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