Posted by
Swayne, Theresa C. on
Jan 05, 2018; 7:30pm
URL: http://imagej.273.s1.nabble.com/BoneJ-and-Java3D-tp5019831p5019832.html
Hi Tim,
I tried to do this too (OS X 10.12), and had similar issues.
However, I was able to use a Windows 7 machine to run BoneJ with Java 6 Fiji.
And I’ve started looking at the pre-release BoneJ2:
https://github.com/bonej-org/BoneJ2/wiki/Installing-BoneJ2It runs on my Mac (using up-to-date, Java 8 Fiji), and it successfully generates a thickness map from a sample image, but I haven’t tested it extensively.
Hope this helps.
------------------------------------
Theresa Swayne, Ph.D.
Associate Research Scientist
Manager, Confocal and Specialized Microscopy Shared Resource<
http://hiccc.columbia.edu/research/sharedresources/confocal>
Herbert Irving Comprehensive Cancer Center
Columbia University Medical Center
1130 St. Nicholas Ave., Room 222A
New York, NY 10032
Phone: 212-851-4613
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From: ImageJ Interest Group <
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Date: Friday, January 5, 2018 at 12:45 PM
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Subject: BoneJ and Java3D
Hi folks,
When I try to run various features in the BoneJ plugin, it tells me that I need to get Java3D via the 3D Viewer plugin. The viewer runs, more or less, but if I try to re-size the viewer window I get a complex error message in the Log window and Fiji freezes completely. 3D viewer also does not fix my Java3D problem. I am using Fiji with the latest updates; ImageJ 1.5.1t; OSX 10.13.1.
I tried installing the May 30, 2017 version of Fiji following the thread below, but BoneJ still did not acknowledge Java#D. The 3D Viewer help menu seems to think that I have the correct Java3D installed.
http://forum.imagej.net/t/bonej-issue-volume-fraction-or-3d-viewer-problem/6823Any ideas?
Tim
Timothy Feinstein, Ph.D.
Research Scientist
Department of Developmental Biology
University of Pittsburgh
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