http://imagej.273.s1.nabble.com/Analyze-3D-skeleton-of-stacks-tp5019872p5019878.html
It definitely looks like a memory issue. The AnalyzeSkeleton plugin is not
optimized for very large skeletons. I will try to work on it, but the
> Hi Ignacio,
> I don't get any error, Fiji just closes a few seconds after I click on
> Analyze Skeleton. I am trying to analyze a stack of 1500 b/w skeleton
> images, their size is 2-4 GB. I can analyze stacks up to 500 images, that
> is, their size is around 1GB.
> My operative system is Windows 7 Enterprise 64-bit, 8GB RAM, and I have
> also tried to work with high performance resources, setting 30GB as maximum
> memory in Memory and Threads under the Edit menu, but I get the same issue.
> Thanks!
> Fabiola
>
>
> <
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>
> On Fri, Jan 12, 2018 at 4:41 AM, Ignacio Arganda-Carreras <
>
[hidden email]> wrote:
>
> > Dear Fabiola,
> >
> > Could you please specify the error message you get, the image size and
> > type, and your computer specifications (operative system, RAM, etc)?
> >
> > thanks!
> >
> > On Thu, Jan 11, 2018 at 5:58 PM, Munarin, Fabiola <
> >
[hidden email]
> > > wrote:
> >
> > > Hi! I am a Postdoc at the Coulombe lab, Brown University. I am working
> > with
> > > the Analyze skeleton Plugin and I am trying to process a stack of 1500
> > > images. However, the software is always crashing when I use stacks
> > composed
> > > of more than 550 images (even when I work with high-performance
> computing
> > > resources). Do you have any idea how to overcome this problem?
> > >
> > > Thanks,
> > > Fabiola
> > >
> > >
> > > --
> > > *Fabiola Munarin*
> > > Post Doc Research Associate
> > > Coulombe Lab
> > > Brown University
> > > School of Engineering
> > > 184 Hope St, Providence, RI 02912
> > > Office: Bert 312
> > > 401-863-5846
> > >
[hidden email]
> > >
> > > *A good head and a good heart are always a formidable combination.*
> > > *(Nelson Mandela)*
> > >
> > > <
http://www.avg.com/email-signature?utm_medium=email&> > > utm_source=link&utm_campaign=sig-email&utm_content=webmail>
> > > Virus-free.
> > > www.avg.com
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> > > <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>
> > >
> > > --
> > > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> > >
> >
> >
> >
> > --
> > Ignacio Arganda-Carreras, Ph.D.
> > Ikerbasque Research Fellow
> > Departamento de Ciencia de la Computacion e Inteligencia Artificial
> > Facultad de Informatica, Universidad del Pais Vasco
> > Paseo de Manuel Lardizabal, 1
> > 20018 Donostia-San Sebastian
> > Guipuzcoa, Spain
> >
> > Phone : +34 943 01 73 25
> > Website:
http://sites.google.com/site/iargandacarreras/> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >
>
>
>
> --
> *Fabiola Munarin*
> Post Doc Research Associate
> Coulombe Lab
> Brown University
> School of Engineering
> 184 Hope St, Providence, RI 02912
> Office: Bert 312
> 401-863-5846
>
[hidden email]
>
> *A good head and a good heart are always a formidable combination.*
> *(Nelson Mandela)*
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>