TrakEM question

Posted by Kenneth Sloan-2 on Mar 10, 2018; 2:20pm
URL: http://imagej.273.s1.nabble.com/TrakEM-question-tp5020256.html

We are using TrakEM to look at a stack of EM images.  It works great!

But, we would like to generate orthogonal views of the stack of images.

I am, alas, completely ignorant of how TrakEM manages the images (multiple tiles, multiple slices).

It seems clear that the image displayed by ImageJ is not a "stack" as far as ImageJ is concerned.
Any attempt to select that window and apply any Stack command fails miserably ("must be a stack").
I didn't really think that would work, but I tried it.

So...is there a way to produce a (perhaps low resolution, perhaps a limited "brick") stack that can be treated as a normal ImageJ stack of images, so that we could use (for example) "Orthogonal Views").

I expect this will be expensive.  The data set is 10-20TB.  So, the key is probably "lower resolution or restricted region in x,y,z"

--
Kenneth Sloan
[hidden email]
Vision is the art of seeing what is invisible to others.

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