Posted by
Herbie on
URL: http://imagej.273.s1.nabble.com/Bug-when-reading-RGB-TIFF-files-with-ROWSPERSTRIP-1-tp5020468p5020481.html
Mark,
due to the highly flexible TIF-definition (a generally positive
property) there is an enormous variety of TIF-file types and ImageJ
can't open all of them (correctly). A typical variety that poses
problems are compressed TIF-files.
BioFormats copes with more TIF-types and most of them it opens without
further processing.
I understand that the steps I've proposed aren't suited for opening
files on a regular basis. Therefore, I suggest to contact the
BioFormats-team and provide typical images that pose problems. In
general, they will have a look at them and if possible provide a
dedicated solution. This means that you may then be able to open such
images via BioFormats directly, i.e. without any further steps or settings.
Regards
Herbie
:::::::::::::::::::::::::::::::::::::::::
Am 16.04.18 um 15:36 schrieb Mark Rivers:
> Hi Herbie,
>
>> Yes Mark,
>> it is an ImageJ-plugin:
>> <
https://www.openmicroscopy.org/bio-formats/downloads/>
>> Please try with BioFormats and please report about your result.
>
>> Regards
>> Herbie
>
>
> Yes, I can read these images with Bioformats as you described. However, that is rather inconvenient. These are perfectly valid TIFF files which can be opened with no problems in other applications (IDL, ImageMagick, Photos, Paint, etc.) so I believe they should open correctly with the built-in ImageJ TIFF reader. The built-in TIFF reader opens them but completely incorrectly.
>
> Thanks,
> Mark
>
>
>
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