Re: Bug when reading RGB TIFF files with ROWSPERSTRIP=1

Posted by Herbie on
URL: http://imagej.273.s1.nabble.com/Bug-when-reading-RGB-TIFF-files-with-ROWSPERSTRIP-1-tp5020468p5020483.html

Mark,

for the time being and if you have the file paths as strings, you may
use this ImageJ-macro to open such TIF-files:

fileName = "test_rgb2_001.tif";
imagePath = "dirPath/"+fileName;
run("Bio-Formats Importer", "open="+imagePath+" color_mode=Default
view=Hyperstack stack_order=XYCZT"); // watch for line break
run("Stack to RGB");
selectWindow(fileName);
close();

HTH

Herbie

:::::::::::::::::::::::::::::::::::::::::
Am 16.04.18 um 15:36 schrieb Mark Rivers:

> Hi Herbie,
>
>> Yes Mark,
>> it is an ImageJ-plugin:
>> <https://www.openmicroscopy.org/bio-formats/downloads/>
>> Please try with BioFormats and please report about your result.
>
>> Regards
>> Herbie
>
>
> Yes, I can read these images with Bioformats as you described.  However, that is rather inconvenient.  These are perfectly valid TIFF files which can be opened with no problems in other applications (IDL, ImageMagick, Photos, Paint, etc.) so I believe they should open correctly with the built-in ImageJ TIFF reader.  The built-in TIFF reader opens them but completely incorrectly.
>
> Thanks,
> Mark
>
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