Re: Bug when reading RGB TIFF files with ROWSPERSTRIP=1

Posted by Herbie on
URL: http://imagej.273.s1.nabble.com/Bug-when-reading-RGB-TIFF-files-with-ROWSPERSTRIP-1-tp5020468p5020506.html

Good day Curtis!

"[...] and they will open correctly."

Mark's images don't open correctly, neither with BioFormats nor with
SCIFIO under Fiji.

Mark's TIF-images should appear as 24bit RGB images but BioFormats and
SCIFIO under Fiji opens them as 3-channel images.

Regards

Herbie

:::::::::::::::::::::::::::::::::::::::::::
Am 17.04.18 um 17:54 schrieb Curtis Rueden:

> Hi Mark,
>
>> It looks like I need ImageJ2 to try that, right?
>
> Yes. The easiest way to get ImageJ2 right now is to download Fiji from
> https://fiji.sc/#download.
>
> Herbie wrote:
>> I see no advantage compared to BioFormats.
>
> The advantage is that enabling the "Use SCIFIO when opening files" option
> will use SCIFIO for drag-and-drop and other integrated file opening
> functions. So you can drag-and-drop these TIFF files onto the ImageJ main
> window, and/or associate ImageJ as the default program to open them, and
> they will open correctly.
>
> Regards,
> Curtis
>
> --
> Curtis Rueden
> LOCI software architect - https://loci.wisc.edu/software
> ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
> Did you know ImageJ has a forum? http://forum.imagej.net/
>
>
> On Tue, Apr 17, 2018 at 8:36 AM, Mark Rivers <[hidden email]>
> wrote:
>
>> Hi Curtis,
>>
>>> If you check the option "Use SCIFIO when opening files (BETA!)" in Edit >
>>> Options > ImageJ2..., TIFF files will be opened using the SCIFIO library,
>>> which has different behavior than plain ImageJ 1.x does.
>>
>> Thanks for the suggestion.  It looks like I need ImageJ2 to try that,
>> right?  I have never tried ImageJ2, and I am having trouble figuring out
>> how to install it.  I downloaded the latest release candidate zip from from
>> Github (imagej-imageJ-2.0.0-rc-65) and unzipped it.  This is on Windows 10,
>> 64-bit.  Do I need to install maven to build this?  Are there any pre-built
>> install packages for ImageJ on Windows?
>>
>> Thanks,
>> Mark
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html