Re: Stitching together multiple images within a series of folders

Posted by nebenb on May 04, 2018; 8:38pm
URL: http://imagej.273.s1.nabble.com/Stitching-together-multiple-images-within-a-series-of-folders-tp5020586p5020624.html

Hi Curtis,

If I'm remembering correctly, ImageJ/FIJI weren't wanting to update because
they couldn't connect to a server? Regardless, I have the BigStitcher beta
now and its GREAT its so easy and straightforward and does a remarkable job
stitching my files together.

I'm still working on understanding how to script the stitching process to be
automated, since I can use the same stitch-settings for each group of files.
Ideally, FIJI would move from folder to folder stitching together the files
in each. I don't see a clear way to do this with BigStitcher but also have
close to zero coding experience and might be missing something obvious.


Dr. Preibisch,

Thank you again for the tip on BigStitcher, it works wonders! As i mentioned
above I'm trying to script the image stitching to be automated. Since the
worms i'm trying to stitch are arbitrarily oriented, I can't define a
tiling-orientation ahead of time, but the stitcher does a good job orienting
the tiles.


Thanks again for all the input,

Ben





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