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Exception opening LIF-files

Posted by Christian Goosmann-2 on May 14, 2018; 11:01am
URL: http://imagej.273.s1.nabble.com/Exception-opening-LIF-files-tp5020662.html

Dear list

I have a problem with LIF-files from a Leica confocal. These file open
without a problem on different machines running the Leica software in
different versions.
In Fiji, using Bioformats, however they always throw an exception with
this message. Saving them with the Leica software of an older version
doesn't help.

'(Fiji Is Just) ImageJ 2.0.0-rc-65/1.52a; Java 1.8.0_66 [64-bit];
Windows 7 6.1; 44MB of 12163MB (<1%)

java.lang.NumberFormatException: For input string: "4,99907766094816"
      at
sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:2043)
      at sun.misc.FloatingDecimal.parseDouble(FloatingDecimal.java:110)
      at java.lang.Double.parseDouble(Double.java:538)
      at java.lang.Double.<init>(Double.java:608)
      at loci.formats.in.LIFReader.translateLaserLines(LIFReader.java:1603)
      at loci.formats.in.LIFReader.translateMetadata(LIFReader.java:1192)
      at loci.formats.in.LIFReader.initMetadata(LIFReader.java:606)
      at loci.formats.in.LIFReader.initFile(LIFReader.java:549)
      at loci.formats.FormatReader.setId(FormatReader.java:1397)
      at
loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:499)
      at loci.plugins.in.ImportProcess.execute(ImportProcess.java:142)
      at loci.plugins.in.Importer.showDialogs(Importer.java:140)
      at loci.plugins.in.Importer.run(Importer.java:76)
      at loci.plugins.LociImporter.run(LociImporter.java:78)
      at ij.IJ.runUserPlugIn(IJ.java:221)
      at ij.IJ.runPlugIn(IJ.java:185)
      at ij.Executer.runCommand(Executer.java:137)
      at ij.Executer.run(Executer.java:66)
      at java.lang.Thread.run(Thread.java:745)  '

I have tried this with different older Fiji versions  e.g. running Java
6 instead of 8 but no luck. Has any one come across this problem or got
a cure? Thank you.


Christian

I have a 3 MB lif that produces the exception here but the list will
only accept messages without attachments.

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Christian Goosmann
Mikroskopie
Max-Planck-Institut für Infektionsbiologie
Campus Charité Mitte
Charitéplatz 1
10117 Berlin
Tel.: +49 30 28460 388

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