ImageJ - Re: Exception opening LIF-files

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Re: Exception opening LIF-files

Posted by ctrueden on
URL: http://imagej.273.s1.nabble.com/Exception-opening-LIF-files-tp5020662p5020665.html

Hi Christian,

I suggest reporting this bug to the Bio-Formats team as described here:

http://www.openmicroscopy.org/site/support/bio-formats/about/bug-reporting.html

At first glance, it looks a bug relating to localization—use of commas
versus periods for the decimal separator.

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - https://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/

On Mon, May 14, 2018 at 6:01 AM, Christian Goosmann <
[hidden email]> wrote:

> Dear list
>
> I have a problem with LIF-files from a Leica confocal. These file open
> without a problem on different machines running the Leica software in
> different versions.
> In Fiji, using Bioformats, however they always throw an exception with
> this message. Saving them with the Leica software of an older version
> doesn't help.
>
> '(Fiji Is Just) ImageJ 2.0.0-rc-65/1.52a; Java 1.8.0_66 [64-bit]; Windows
> 7 6.1; 44MB of 12163MB (<1%)
>
> java.lang.NumberFormatException: For input string: "4,99907766094816"
> at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecima
> l.java:2043)
> at sun.misc.FloatingDecimal.parseDouble(FloatingDecimal.java:110)
> at java.lang.Double.parseDouble(Double.java:538)
> at java.lang.Double.<init>(Double.java:608)
> at loci.formats.in.LIFReader.translateLaserLines(LIFReader.java:1603)
> at loci.formats.in.LIFReader.translateMetadata(LIFReader.java:1192)
> at loci.formats.in.LIFReader.initMetadata(LIFReader.java:606)
> at loci.formats.in.LIFReader.initFile(LIFReader.java:549)
> at loci.formats.FormatReader.setId(FormatReader.java:1397)
> at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.j
> ava:499)
> at loci.plugins.in.ImportProcess.execute(ImportProcess.java:142)
> at loci.plugins.in.Importer.showDialogs(Importer.java:140)
> at loci.plugins.in.Importer.run(Importer.java:76)
> at loci.plugins.LociImporter.run(LociImporter.java:78)
> at ij.IJ.runUserPlugIn(IJ.java:221)
> at ij.IJ.runPlugIn(IJ.java:185)
> at ij.Executer.runCommand(Executer.java:137)
> at ij.Executer.run(Executer.java:66)
> at java.lang.Thread.run(Thread.java:745) '
>
> I have tried this with different older Fiji versions e.g. running Java 6
> instead of 8 but no luck. Has any one come across this problem or got a
> cure? Thank you.
>
>
> Christian
>
> I have a 3 MB lif that produces the exception here but the list will only
> accept messages without attachments.
>
> --
> ---
> Christian Goosmann
> Mikroskopie
> Max-Planck-Institut für Infektionsbiologie
> Campus Charité Mitte
> Charitéplatz 1
> 10117 Berlin
> Tel.: +49 30 28460 388
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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