Posted by
Ed Siefker on
Aug 21, 2018; 2:50pm
URL: http://imagej.273.s1.nabble.com/Exporting-a-stack-from-TrackEM2-tp5021105.html
I have aligned two normalized, 16-bit images in TrackEM2. I want to
export them as a tiff stack.
The right click menu has an "Export" option, but in that submenu
there's no option that does this.
It does have a "Make flat image..." option. I'd be fine getting my
images as individual images and recreating the stack myself.
Unfortunately, it doesn't export 16-bit images. It also doesn't seem
to work.
I have one image visible in the "Patches" tab. Right click, Export,
Make flat image. I get a nice monochrome image of reasonable
intensity(Max=226). Then I deselect that image, and make the other
one visible. Right click, Export, Make flat image. This image is
much, much darker. (Max=29).
My input images have identical max intensities (65332). Why is this
happening? What's the right way to do this? Is this covered in the
manual somewhere? I couldn't find it.
-Ed
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