http://imagej.273.s1.nabble.com/Exporting-a-stack-from-TrackEM2-tp5021105p5021106.html
Would be happy to address this question by Sept 6. Please remind me. Thanks.
> On Aug 21, 2018, at 4:50 PM, Ed Siefker <
[hidden email]> wrote:
>
> I have aligned two normalized, 16-bit images in TrackEM2. I want to
> export them as a tiff stack.
>
> The right click menu has an "Export" option, but in that submenu
> there's no option that does this.
>
> It does have a "Make flat image..." option. I'd be fine getting my
> images as individual images and recreating the stack myself.
> Unfortunately, it doesn't export 16-bit images. It also doesn't seem
> to work.
>
> I have one image visible in the "Patches" tab. Right click, Export,
> Make flat image. I get a nice monochrome image of reasonable
> intensity(Max=226). Then I deselect that image, and make the other
> one visible. Right click, Export, Make flat image. This image is
> much, much darker. (Max=29).
>
> My input images have identical max intensities (65332). Why is this
> happening? What's the right way to do this? Is this covered in the
> manual somewhere? I couldn't find it.
> -Ed
>
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