Re: bio-formats importer broken

Posted by Jeff Spector-2 on
URL: http://imagej.273.s1.nabble.com/bio-formats-importer-broken-tp5021107p5021116.html

Hi,
According to what you asked I am using
Bio-formats Release 5.9.1-SNAPSHOT    Build Date  10 August 2018
formats-api-5.9.1-20180810.111715-4.jar
formats-bsd-5.7.3.jar
formats-gpl-5.9.1-20180810.111724-4.jar

I recently updated. Bio-Formats worked fine before the update. I'm running
IJ 1.52e on a Mac if that helps.

 -Jeff



On Thu, Aug 23, 2018 at 6:38 AM David Gault (Staff) <[hidden email]>
wrote:

> Hi,
>
> This sounds like you have mismatched versions of some of of the
> Bio-Formats jars. Can you tell me which version you currently are using:
> Help > About Plugins > Bio-Formats Plugins
>
> Also if you go to the folder Fiji/jars/bio-formats can you tell me which
> versions of the below jars you have:
> formats-api
> formats-bsd
> formats-gpl
>
> With Thanks,
> David Gault
>
> On 22 Aug 2018, at 17:07, Glen MacDonald <[hidden email]<mailto:
> [hidden email]>> wrote:
>
> I started getting same behavior and message last week attempting to open
> several formats.
> OS 10.11.6, Java 1.8.0_162 [64-bit]
> Re-installing Bio-Formats did not resolve thie behavior.
> Glen
>
>
> On Aug 22, 2018, at 8:42 AM, Jeff Spector <[hidden email]<mailto:
> [hidden email]>> wrote:
>
> Greetings,
> I updated my FIJI installation today and now Bio-Formats crashed when I
> try to import an image. I get the following error :
>
> (Fiji Is Just) ImageJ 2.0.0-rc-68/1.52e; Java 1.8.0_66 [64-bit]; Mac OS X
> 10.11.6; 267MB of 17778MB (1%)
>
> java.lang.NoSuchFieldError: mergeSubIFDs
> at loci.formats.in.NikonReader.<init>(NikonReader.java:119)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at
>
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
> at
>
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
> at java.lang.Class.newInstance(Class.java:442)
> at loci.formats.ImageReader.<init>(ImageReader.java:129)
> at loci.formats.in.FilePatternReader.<init>(FilePatternReader.java:77)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at
>
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
> at
>
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
> at java.lang.Class.newInstance(Class.java:442)
> at loci.formats.ImageReader.<init>(ImageReader.java:129)
> at loci.plugins.util.LociPrefs.makeImageReader(LociPrefs.java:100)
> at loci.plugins.in.ImportProcess.createBaseReader(ImportProcess.java:619)
> at loci.plugins.in.ImportProcess.initializeReader(ImportProcess.java:485)
> at loci.plugins.in.ImportProcess.execute(ImportProcess.java:138)
> at loci.plugins.in.Importer.showDialogs(Importer.java:140)
> at loci.plugins.in.Importer.run(Importer.java:76)
> at loci.plugins.LociImporter.run(LociImporter.java:78)
> at ij.IJ.runUserPlugIn(IJ.java:228)
> at ij.IJ.runPlugIn(IJ.java:192)
> at ij.Executer.runCommand(Executer.java:137)
> at ij.Executer.run(Executer.java:66)
> at java.lang.Thread.run(Thread.java:745)
>
>
>
>
> can someone please help? I've tried uninstalling and re-installing
> bio-formats but get the same result.
> Thanks!
> -Jeff
>
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