Using the Bioformats importer to open .ims files in a macro

Posted by Jacqueline Ross on Sep 19, 2018; 12:59am
URL: http://imagej.273.s1.nabble.com/Using-the-Bioformats-importer-to-open-ims-files-in-a-macro-tp5021199.html

Hi everyone,

Our slide-scanner has an option to save files as .ims (Imaris) format. This allows us to open the files in ImageJ at different resolution levels.

I'm trying to write a macro that will open the files at "Resolution Level 2" rather than Level 1 (which is the highest) and just can't seem to get this to work.

Has anyone done this already and is willing to share the code?

It would be similar for those opening Leica .lif files where you can select the Series number.

Thanks!

Kind regards,

Jacqui

Jacqueline Ross
Biomedical Imaging Microscopist
Biomedical Imaging Research Unit (BIRU)
School of Medical Sciences
Faculty of Medical & Health Sciences
The University of Auckland
Private Bag 92019
Auckland 1142, NEW ZEALAND

Telephone: Ext 87438; DDI:  [phone]

Website:    http://www.auckland.ac.nz/biru




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