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Re: Help to download and install Oval Profile Plugin

Posted by Herbie on Apr 10, 2019; 3:29pm
URL: http://imagej.273.s1.nabble.com/Help-to-download-and-install-Oval-Profile-Plugin-tp5021950p5022048.html

I'm unable to compile and run "Oval_Profile.java" from the Fiji Script
Editor (fresh download) after having entered the code to the editor.

With the menu command "Compile and Run" I get:
"Oval_Profile not up-to-date because 1 source files are not up-to-date
(/var/folders/7g/9r90_ps92r72prt3_d3v52l80000gn/T/java3585174238626278361/src/main/java/Oval_Profile.java)"
etc.

Can't even find a corresponding compiled ".class"-file.

With plain ImageJ I encounter no problems when using "Compile and Run...".

That's why I wrote:
"If you use Fiji, then there is no easy way to compile and run Java
source code."

Regards

Herbie

:::::::::::::::::::::::::::::::::::::::::::
Am 10.04.19 um 16:06 schrieb Curtis Rueden:

> Hi everyone,
>
>> If you use Fiji, then there is no easy way to compile and run Java
>> source code.
>
> That is not the case. Fiji comes bundled with the SciJava Script Editor (
> https://imagej.net/Script_Editor), which supports compiling and running
> Java code.
>
>> the "Compile and Run..."-feature is still missing in Fiji.
>
> For those who want to read about the technical issues surreounding "Compile
> and Run" and other dynamic classpath features of IJ1, see these links:
>
> * https://github.com/imagej/imagej-ui-swing/issues/48
> * https://github.com/imagej/imagej-legacy/issues/98
>
> Regards,
> Curtis
>
> --
> Curtis Rueden
> LOCI software architect - https://loci.wisc.edu/software
> ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
> Have you tried the Image.sc Forum? https://forum.image.sc/
>
>
>
> On Sat, Mar 30, 2019 at 3:48 AM Herbie <[hidden email]> wrote:
>
>> Good day,
>>
>> please study the installation recommendations given here:
>> <https://imagej.nih.gov/ij/plugins/oval-profile.html>
>>
>> For plain ImageJ the following works for me:
>>
>> 1.
>> Copy the Java source code to an empty text window (Plugins >> New >>
>> Text Window...).
>>
>> 2.
>> Name this file Oval_Profile.java. (The underscore is essential!)
>>
>> 3.
>> Compile an run this code file (Plugins >> Compile and Run...).
>>
>> 4. The plugin starts.
>>
>> If you restart ImageJ the plugin will be listed in the Plugins menu.
>>
>> If you use Fiji, then there is no easy way to compile and run Java
>> source code. For whatever reasons the "Compile and Run..."-feature is
>> still missing in Fiji.
>>
>> HTH
>>
>> Herbie
>>
>> ::::::::::::::::::::::::::::::::::::::::::::::::::
>> Am 30.03.19 um 03:58 schrieb Durgam, Sushmitha S.:
>>> Hi. I am unable to install the Oval profile Plug in to obtain radial sum
>> of FFT alignment
>>>
>>>
>>> Would appreciate help and any directions
>>>
>>>
>>> Thanks,
>>>
>>> Sushmitha
>>>
>>>
>>> [The Ohio State University]
>>> Sushmitha Durgam, BVSc, PhD, DACVS-LA
>>> Assistant Professor, Equine Surgery
>>> College of Veterinary Medicine Dept. of Veterinary Clinical Sciences
>>> 370 VMAB, 1900 Coffey Road, Columbus, OH 43210
>>> 614-292-6661 (Ext - 2) Office / 248-909-6993 Mobile / 614-688-5642 Fax
>>> [hidden email]<mailto:[hidden email]>
>>>
>>>
>>>
>>>
>>> --
>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>>
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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