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Re: Help to download and install Oval Profile Plugin

Posted by Herbie on Apr 12, 2019; 7:12am
URL: http://imagej.273.s1.nabble.com/Help-to-download-and-install-Oval-Profile-Plugin-tp5021950p5022066.html

Good day!

Your "ImageJ"-installation, actually a folder named "ImageJ", should
reside in your Mac "Applications"-folder.

In this "ImageJ"-folder you should find a folder named "plugins" and
this is the folder where all those ImageJ-plugins should reside that you
like to use and that, after a restart of ImageJ, are listed in the
"Plugins"-menu.

In essence, copy the three files to the "plugins"-folder that is in the
"ImageJ"-folder.

Good luck

Herbie

::::::::::::::::::::::::::::::::::::::::::::::::::
Am 12.04.19 um 06:42 schrieb Durgam, Sushmitha S.:

> Hello,
>
> I am still unable to get Oval Profile installed on imageJ
>
> I was able to unzip the archive you sent.
> How do I copy the three class files into plugins folder on a Mac?
> Seems like I may be doing that step wrong.
>
> Thanks,
> Sushmitha
>
> On 4/11/19, 3:17 AM, "Herbie" <[hidden email]> wrote:
>
>      Good day Sushmitha,
>      
>      this looks more like a problem with Java-versions.
>      Do you have different versions of Java installed?
>      Do you have more than one version of ImageJ installed?
>      
>      Attached please find a zip-Archive containing three files.
>      
>      1.
>      Unzip the archive.
>      
>      2.
>      Copy the three files to the "plugins"-folder of your ImageJ-installation.
>      
>      3.
>      Restart ImageJ.
>      
>      4.
>      Attached please find a screenshot of the "Plugins"-menu after the
>      installation.
>      
>      HTH
>      
>      Herbie
>      
>      Oval_Profile.zip
>      <http://imagej.1557.x6.nabble.com/file/t380516/Oval_Profile.zip>
>      ScreenShot.png
>      <http://imagej.1557.x6.nabble.com/file/t380516/ScreenShot.png>
>      ::::::::::::::::::::::::::::::::::::::::::::::::::
>      
>      Durgam, Sushmitha S. wrote
>      > Hello,
>      >
>      > Thanks so much for the prompt response. Much appreciate it.
>      >
>      > Unfortunately I am still unable to install the plug in. I am able to save
>      > the text file as you mentioned in 1 and 2
>      >
>      > After I compile and run I get this following message.
>      >
>      > When I restart ImageJ I do not see the plugin
>      >
>      > Any suggestions?
>      >
>      > Thanks,
>      > Sushmitha
>      >
>      > I will respond to your question on directionality analysis in a following
>      > email
>      >
>      > On 4/10/19, 5:21 AM, "Herbie" &lt;
>      
>      > l16@
>      
>      > &gt; wrote:
>      >
>      >     Good day Sushmitha,
>      >
>      >     you are right I was a bit too concise with the description of point 2.
>      >
>      >     For plain ImageJ the following works for me:
>      >
>      >     1.
>      >     Copy the Java source code to an empty text window (Plugins >> New >>
>      >     Text Window...).
>      >
>      >     2.
>      >     Save this file as "Oval_Profile.java" (the underscore is essential!)
>      > to
>      >     the plugins-folder of your ImageJ installation.
>      >
>      >     3.
>      >     Go to "Plugins >> Compile and Run..." and in the then opening file
>      >     dialog search for the "Oval_Profile.java"-file in the plugins-folder
>      > and
>      >     open it.
>      >
>      >     4.
>      >     The plugin will be compiled and starts running.
>      >     (It is automatically stored as "Oval_Profile.class"-file in the
>      >     plugins-folder of your ImageJ installation.)
>      >
>      >     5.
>      >     After restarting ImageJ you will find the plugin listed in the Plugins
>      >     menu of ImageJ.
>      >
>      >     HTH
>      >
>      >     Herbie
>      >     __________________________
>      >
>      >     PS:
>      >     What is your opinion about the results I've provide concerning
>      >     orientation analyses?
>      >
>      >     :::::::::::::::::::::::::::
>      >     > Dear Herbie,
>      >     >
>      >     > I am unable to install this plugin
>      >     >
>      >     > I am able to do step1
>      >     > In step 2 - where do you save the java file? In macros?
>      >     > Does this matter in Mac or PC. Tried on a Mac
>      >     >
>      >     > I think I am messing up in saving the coding file and therefore
>      > unable to run this code file.
>      >     >
>      >     > Next when I compile and run I cannot find the Oval Profile plug in
>      > at all.
>      >     >
>      >     > Thanks for the info
>      >     >
>      >     > Sushmitha
>      >     >
>      >     > On 3/30/19, 4:48 AM, "ImageJ Interest Group on behalf of Herbie"
>      > &lt;
>      
>      > IMAGEJ@.NIH
>      
>      >  on behalf of
>      
>      > l16@
>      
>      > &gt; wrote:
>      >     >
>      >     >      Good day,
>      >     >
>      >     >      please study the installation recommendations given here:
>      >     >      &lt;https://imagej.nih.gov/ij/plugins/oval-profile.html&gt;
>      >     >
>      >     >      For plain ImageJ the following works for me:
>      >     >
>      >     >      1.
>      >     >      Copy the Java source code to an empty text window (Plugins >>
>      > New >>
>      >     >      Text Window...).
>      >     >
>      >     >      2.
>      >     >      Name this file Oval_Profile.java. (The underscore is
>      > essential!)
>      >     >
>      >     >      3.
>      >     >      Compile an run this code file (Plugins >> Compile and Run...).
>      >     >
>      >     >      4. The plugin starts.
>      >     >
>      >     >      If you restart ImageJ the plugin will be listed in the Plugins
>      > menu.
>      >     >
>      >     >      If you use Fiji, then there is no easy way to compile and run
>      > Java
>      >     >      source code. For whatever reasons the "Compile and
>      > Run..."-feature is
>      >     >      still missing in Fiji.
>      >     >
>      >     >      HTH
>      >     >
>      >     >      Herbie
>      >     >
>      >     >      ::::::::::::::::::::::::::::::::::::::::::::::::::
>      >     >      Am 30.03.19 um 03:58 schrieb Durgam, Sushmitha S.:
>      >     >      > Hi. I am unable to install the Oval profile Plug in to obtain
>      > radial sum of FFT alignment
>      >     >      >
>      >     >      >
>      >     >      > Would appreciate help and any directions
>      >     >      >
>      >     >      >
>      >     >      > Thanks,
>      >     >      >
>      >     >      > Sushmitha
>      >     >      >
>      >     >      >
>      >     >      > [The Ohio State University]
>      >     >      > Sushmitha Durgam, BVSc, PhD, DACVS-LA
>      >     >      > Assistant Professor, Equine Surgery
>      >     >      > College of Veterinary Medicine Dept. of Veterinary Clinical
>      > Sciences
>      >     >      > 370 VMAB, 1900 Coffey Road, Columbus, OH 43210
>      >     >      > 614-292-6661 (Ext - 2) Office / 248-909-6993 Mobile /
>      > 614-688-5642 Fax
>      >     >      >
>      
>      > durgam.3@
>      
>      > &lt;mailto:
>      
>      > durgam.3@
>      
>      > &gt;
>      >     >      >
>      >     >      >
>      >     >      >
>      >     >      >
>      >     >      > --
>      >     >      > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>      >     >      >
>      >     >
>      >     >      --
>      >     >      ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>      >     >
>      >     >
>      >
>      >
>      >
>      > --
>      > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>      >
>      >
>      > Screen Shot 2019-04-11 at 2.30.31 AM.png (558K)
>      > &lt;http://imagej.1557.x6.nabble.com/attachment/5022051/0/Screen%20Shot%202019-04-11%20at%202.30.31%20AM.png&gt;
>      
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>      --
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