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Re: Help to download and install Oval Profile Plugin

Posted by Glen MacDonald-3 on Apr 12, 2019; 2:04pm
URL: http://imagej.273.s1.nabble.com/Help-to-download-and-install-Oval-Profile-Plugin-tp5021950p5022070.html

On the Mac, open the Applications folder and right-click on the Fiji.app icon.  then select ’Show Package Contents’.  

Glen

> On Apr 11, 2019, at 9:42 PM, Durgam, Sushmitha S. <[hidden email]> wrote:
>
> Hello,
>
> I am still unable to get Oval Profile installed on imageJ
>
> I was able to unzip the archive you sent.
> How do I copy the three class files into plugins folder on a Mac?
> Seems like I may be doing that step wrong.
>
> Thanks,
> Sushmitha
>
> On 4/11/19, 3:17 AM, "Herbie" <[hidden email]> wrote:
>
>    Good day Sushmitha,
>
>    this looks more like a problem with Java-versions.
>    Do you have different versions of Java installed?
>    Do you have more than one version of ImageJ installed?
>
>    Attached please find a zip-Archive containing three files.
>
>    1.
>    Unzip the archive.
>
>    2.
>    Copy the three files to the "plugins"-folder of your ImageJ-installation.
>
>    3.
>    Restart ImageJ.
>
>    4.
>    Attached please find a screenshot of the "Plugins"-menu after the
>    installation.
>
>    HTH
>
>    Herbie
>
>    Oval_Profile.zip
>    <http://imagej.1557.x6.nabble.com/file/t380516/Oval_Profile.zip>  
>    ScreenShot.png
>    <http://imagej.1557.x6.nabble.com/file/t380516/ScreenShot.png>  
>    ::::::::::::::::::::::::::::::::::::::::::::::::::
>
>    Durgam, Sushmitha S. wrote
>> Hello,
>>
>> Thanks so much for the prompt response. Much appreciate it.
>>
>> Unfortunately I am still unable to install the plug in. I am able to save
>> the text file as you mentioned in 1 and 2
>>
>> After I compile and run I get this following message.
>>
>> When I restart ImageJ I do not see the plugin
>>
>> Any suggestions?
>>
>> Thanks,
>> Sushmitha
>>
>> I will respond to your question on directionality analysis in a following
>> email
>>
>> On 4/10/19, 5:21 AM, "Herbie" &lt;
>
>> l16@
>
>> &gt; wrote:
>>
>>    Good day Sushmitha,
>>
>>    you are right I was a bit too concise with the description of point 2.
>>
>>    For plain ImageJ the following works for me:
>>
>>    1.
>>    Copy the Java source code to an empty text window (Plugins >> New >>
>>    Text Window...).
>>
>>    2.
>>    Save this file as "Oval_Profile.java" (the underscore is essential!)
>> to
>>    the plugins-folder of your ImageJ installation.
>>
>>    3.
>>    Go to "Plugins >> Compile and Run..." and in the then opening file
>>    dialog search for the "Oval_Profile.java"-file in the plugins-folder
>> and
>>    open it.
>>
>>    4.
>>    The plugin will be compiled and starts running.
>>    (It is automatically stored as "Oval_Profile.class"-file in the
>>    plugins-folder of your ImageJ installation.)
>>
>>    5.
>>    After restarting ImageJ you will find the plugin listed in the Plugins
>>    menu of ImageJ.
>>
>>    HTH
>>
>>    Herbie
>>    __________________________
>>
>>    PS:
>>    What is your opinion about the results I've provide concerning
>>    orientation analyses?
>>
>>    :::::::::::::::::::::::::::
>>> Dear Herbie,
>>>
>>> I am unable to install this plugin
>>>
>>> I am able to do step1
>>> In step 2 - where do you save the java file? In macros?
>>> Does this matter in Mac or PC. Tried on a Mac
>>>
>>> I think I am messing up in saving the coding file and therefore
>> unable to run this code file.
>>>
>>> Next when I compile and run I cannot find the Oval Profile plug in
>> at all.
>>>
>>> Thanks for the info
>>>
>>> Sushmitha
>>>
>>> On 3/30/19, 4:48 AM, "ImageJ Interest Group on behalf of Herbie"
>> &lt;
>
>> IMAGEJ@.NIH
>
>> on behalf of
>
>> l16@
>
>> &gt; wrote:
>>>
>>>     Good day,
>>>
>>>     please study the installation recommendations given here:
>>>     &lt;https://imagej.nih.gov/ij/plugins/oval-profile.html&gt;
>>>
>>>     For plain ImageJ the following works for me:
>>>
>>>     1.
>>>     Copy the Java source code to an empty text window (Plugins >>
>> New >>
>>>     Text Window...).
>>>
>>>     2.
>>>     Name this file Oval_Profile.java. (The underscore is
>> essential!)
>>>
>>>     3.
>>>     Compile an run this code file (Plugins >> Compile and Run...).
>>>
>>>     4. The plugin starts.
>>>
>>>     If you restart ImageJ the plugin will be listed in the Plugins
>> menu.
>>>
>>>     If you use Fiji, then there is no easy way to compile and run
>> Java
>>>     source code. For whatever reasons the "Compile and
>> Run..."-feature is
>>>     still missing in Fiji.
>>>
>>>     HTH
>>>
>>>     Herbie
>>>
>>>     ::::::::::::::::::::::::::::::::::::::::::::::::::
>>>     Am 30.03.19 um 03:58 schrieb Durgam, Sushmitha S.:
>>>> Hi. I am unable to install the Oval profile Plug in to obtain
>> radial sum of FFT alignment
>>>>
>>>>
>>>> Would appreciate help and any directions
>>>>
>>>>
>>>> Thanks,
>>>>
>>>> Sushmitha
>>>>
>>>>
>>>> [The Ohio State University]
>>>> Sushmitha Durgam, BVSc, PhD, DACVS-LA
>>>> Assistant Professor, Equine Surgery
>>>> College of Veterinary Medicine Dept. of Veterinary Clinical
>> Sciences
>>>> 370 VMAB, 1900 Coffey Road, Columbus, OH 43210
>>>> 614-292-6661 (Ext - 2) Office / 248-909-6993 Mobile /
>> 614-688-5642 Fax
>>>>
>
>> durgam.3@
>
>> &lt;mailto:
>
>> durgam.3@
>
>> &gt;
>>>>
>>>>
>>>>
>>>>
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>>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>>>
>>>
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>>>
>>>
>>
>>
>>
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>>
>>
>> Screen Shot 2019-04-11 at 2.30.31 AM.png (558K)
>> &lt;http://imagej.1557.x6.nabble.com/attachment/5022051/0/Screen%20Shot%202019-04-11%20at%202.30.31%20AM.png&gt;
>
>
>
>
>
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