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Re: Help to download and install Oval Profile Plugin

Posted by Herbie on Apr 12, 2019; 4:22pm
URL: http://imagej.273.s1.nabble.com/Help-to-download-and-install-Oval-Profile-Plugin-tp5021950p5022071.html

Glen,

according to a screenshot made available with an earlier post of
Sushmitha, she uses plain ImageJ not Fiji.

Regards

Herbie


Am 12.04.19 um 16:04 schrieb Glen MacDonald:

> On the Mac, open the Applications folder and right-click on the Fiji.app icon.  then select ’Show Package Contents’.
>
> Glen
>
>> On Apr 11, 2019, at 9:42 PM, Durgam, Sushmitha S. <[hidden email]> wrote:
>>
>> Hello,
>>
>> I am still unable to get Oval Profile installed on imageJ
>>
>> I was able to unzip the archive you sent.
>> How do I copy the three class files into plugins folder on a Mac?
>> Seems like I may be doing that step wrong.
>>
>> Thanks,
>> Sushmitha
>>
>> On 4/11/19, 3:17 AM, "Herbie" <[hidden email]> wrote:
>>
>>     Good day Sushmitha,
>>
>>     this looks more like a problem with Java-versions.
>>     Do you have different versions of Java installed?
>>     Do you have more than one version of ImageJ installed?
>>
>>     Attached please find a zip-Archive containing three files.
>>
>>     1.
>>     Unzip the archive.
>>
>>     2.
>>     Copy the three files to the "plugins"-folder of your ImageJ-installation.
>>
>>     3.
>>     Restart ImageJ.
>>
>>     4.
>>     Attached please find a screenshot of the "Plugins"-menu after the
>>     installation.
>>
>>     HTH
>>
>>     Herbie
>>
>>     Oval_Profile.zip
>>     <http://imagej.1557.x6.nabble.com/file/t380516/Oval_Profile.zip>
>>     ScreenShot.png
>>     <http://imagej.1557.x6.nabble.com/file/t380516/ScreenShot.png>
>>     ::::::::::::::::::::::::::::::::::::::::::::::::::
>>
>>     Durgam, Sushmitha S. wrote
>>> Hello,
>>>
>>> Thanks so much for the prompt response. Much appreciate it.
>>>
>>> Unfortunately I am still unable to install the plug in. I am able to save
>>> the text file as you mentioned in 1 and 2
>>>
>>> After I compile and run I get this following message.
>>>
>>> When I restart ImageJ I do not see the plugin
>>>
>>> Any suggestions?
>>>
>>> Thanks,
>>> Sushmitha
>>>
>>> I will respond to your question on directionality analysis in a following
>>> email
>>>
>>> On 4/10/19, 5:21 AM, "Herbie" &lt;
>>
>>> l16@
>>
>>> &gt; wrote:
>>>
>>>     Good day Sushmitha,
>>>
>>>     you are right I was a bit too concise with the description of point 2.
>>>
>>>     For plain ImageJ the following works for me:
>>>
>>>     1.
>>>     Copy the Java source code to an empty text window (Plugins >> New >>
>>>     Text Window...).
>>>
>>>     2.
>>>     Save this file as "Oval_Profile.java" (the underscore is essential!)
>>> to
>>>     the plugins-folder of your ImageJ installation.
>>>
>>>     3.
>>>     Go to "Plugins >> Compile and Run..." and in the then opening file
>>>     dialog search for the "Oval_Profile.java"-file in the plugins-folder
>>> and
>>>     open it.
>>>
>>>     4.
>>>     The plugin will be compiled and starts running.
>>>     (It is automatically stored as "Oval_Profile.class"-file in the
>>>     plugins-folder of your ImageJ installation.)
>>>
>>>     5.
>>>     After restarting ImageJ you will find the plugin listed in the Plugins
>>>     menu of ImageJ.
>>>
>>>     HTH
>>>
>>>     Herbie
>>>     __________________________
>>>
>>>     PS:
>>>     What is your opinion about the results I've provide concerning
>>>     orientation analyses?
>>>
>>>     :::::::::::::::::::::::::::
>>>> Dear Herbie,
>>>>
>>>> I am unable to install this plugin
>>>>
>>>> I am able to do step1
>>>> In step 2 - where do you save the java file? In macros?
>>>> Does this matter in Mac or PC. Tried on a Mac
>>>>
>>>> I think I am messing up in saving the coding file and therefore
>>> unable to run this code file.
>>>>
>>>> Next when I compile and run I cannot find the Oval Profile plug in
>>> at all.
>>>>
>>>> Thanks for the info
>>>>
>>>> Sushmitha
>>>>
>>>> On 3/30/19, 4:48 AM, "ImageJ Interest Group on behalf of Herbie"
>>> &lt;
>>
>>> IMAGEJ@.NIH
>>
>>> on behalf of
>>
>>> l16@
>>
>>> &gt; wrote:
>>>>
>>>>      Good day,
>>>>
>>>>      please study the installation recommendations given here:
>>>>      &lt;https://imagej.nih.gov/ij/plugins/oval-profile.html&gt;
>>>>
>>>>      For plain ImageJ the following works for me:
>>>>
>>>>      1.
>>>>      Copy the Java source code to an empty text window (Plugins >>
>>> New >>
>>>>      Text Window...).
>>>>
>>>>      2.
>>>>      Name this file Oval_Profile.java. (The underscore is
>>> essential!)
>>>>
>>>>      3.
>>>>      Compile an run this code file (Plugins >> Compile and Run...).
>>>>
>>>>      4. The plugin starts.
>>>>
>>>>      If you restart ImageJ the plugin will be listed in the Plugins
>>> menu.
>>>>
>>>>      If you use Fiji, then there is no easy way to compile and run
>>> Java
>>>>      source code. For whatever reasons the "Compile and
>>> Run..."-feature is
>>>>      still missing in Fiji.
>>>>
>>>>      HTH
>>>>
>>>>      Herbie
>>>>
>>>>      ::::::::::::::::::::::::::::::::::::::::::::::::::
>>>>      Am 30.03.19 um 03:58 schrieb Durgam, Sushmitha S.:
>>>>> Hi. I am unable to install the Oval profile Plug in to obtain
>>> radial sum of FFT alignment
>>>>>
>>>>>
>>>>> Would appreciate help and any directions
>>>>>
>>>>>
>>>>> Thanks,
>>>>>
>>>>> Sushmitha
>>>>>
>>>>>
>>>>> [The Ohio State University]
>>>>> Sushmitha Durgam, BVSc, PhD, DACVS-LA
>>>>> Assistant Professor, Equine Surgery
>>>>> College of Veterinary Medicine Dept. of Veterinary Clinical
>>> Sciences
>>>>> 370 VMAB, 1900 Coffey Road, Columbus, OH 43210
>>>>> 614-292-6661 (Ext - 2) Office / 248-909-6993 Mobile /
>>> 614-688-5642 Fax
>>>>>
>>
>>> durgam.3@
>>
>>> &lt;mailto:
>>
>>> durgam.3@
>>
>>> &gt;
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>>>>
>>>>
>>>>      --
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>>>>
>>>>
>>>
>>>
>>>
>>> --
>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>>
>>>
>>> Screen Shot 2019-04-11 at 2.30.31 AM.png (558K)
>>> &lt;http://imagej.1557.x6.nabble.com/attachment/5022051/0/Screen%20Shot%202019-04-11%20at%202.30.31%20AM.png&gt;
>>
>>
>>
>>
>>
>>     --
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>>
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>>
>>
>>
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