ParticleAnalyzer class option to show bare outlines

Posted by Andrew Sonnier on
URL: http://imagej.273.s1.nabble.com/ParticleAnalyzer-class-option-to-show-bare-outlines-tp5022208.html

Hello,

I am writing a java program using the ImageJ framework for image analysis.
In this program I would like to run the analyze particle command through the
ParticleAnalyzer.java class on an image but I am having issues setting the
correct options to meet my outputs:

Here are the options I would like:
*Show: Bare Outlines
*Include Holes
*Size: 0-Infinity
*Circulation: 0-1

Here is my code so far:
    ParticleAnalyzer pa = new
   
ParticleAnalyzer(ParticleAnalyzer.INCLUDE_HOLES+ParticleAnalyzer.SHOW_OUTLINES,
0, null, 0,
          Double.MAX_VALUE, 0, 1);
    pa.analyze(img);
    pa.getOutputImage().show();

img is a 8-bit binary image created through the
ImageProcessor.setThreshold().

The issue I have run into is there seems to be no way to get bare outlines
through the options constructor. When I analyzed the
ij.plugin.filter.ParticleAnalyzer source code, it seems that the flag exists
but is not implemented for some reason. What is the best option for me to
proceed?

I have found that the process/binary/fill holes and process/binary/outline
functions produce a similar result but I have had minimal success with
automating this as well.



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