Re: Macro for merging 2 channels of .nd2 files

Posted by Krs5 on Aug 06, 2019; 7:49am
URL: http://imagej.273.s1.nabble.com/Macro-for-merging-2-channels-of-nd2-files-tp5022347p5022349.html

try to use

Ext.openImagePlus(path+filelist[i]);
run("Split Channels");

instead of
name = path + filelist[i];
run("Bio-Formats Importer", "open= ["+name+"] color_mode=Default
view=Hyperstack stack_order=XYCZT color_mode=Default split_channels");

You have to check what the titles will be of the different channels after
splitting them and adjusting your code accordingly.

Hope this works

Best wishes

Kees

Dr Ir K.R. Straatman
Senior Experimental Officer
Advanced Imaging Facility
Centre for Core Biotechnology Services
University of Leicester
www.le.ac.uk/advanced-imaging-facility

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