http://imagej.273.s1.nabble.com/selectWindow-does-not-work-tp5022577p5022598.html
You are right. Sorry, I missed this small detail to consider. Thank you for
clarification. I concentrated more on the second part...:)
Dne po 28. 10. 2019 13:51 uživatel CARL Philippe (LBP) <
> Dear Ondřej,
>
> > He has split the title into the array "nme" consisting of element 0 =
> "filename"
> > and 1 = ".tif" (suffix).
>
> Ehhh sorry Ondřej, but the resulting nme[1] arry element will be "tif" and
> not ".tif" (given that "." is the sub-String that cut the String).
>
> > If you want to concatenate this with hard coded prefix you have to do it
> like this:
> > imgName="c:1/2 - "+nme[0]+nme[1] //in case you want to include suffix
>
> Thus given the correction higher, imgName should rather be written:
> imgName = "c:1/2 - " + nme[0] + "." + nme[1];
>
> I'm really sorry to bother with "details", but if we want to teach
> something to a beginner it is rather better to teach it right on the first
> place.
>
> Also knowing I'm a bad teacher, I nevertheless always try to remember
> Richard P. Feynman (Physics Nobel Prize and excellent lecturer) words:
> "There's always an easy way to explain everything, it is just very hard to
> find it".
>
> My best regards,
>
> Philippe
>
>
> Philippe CARL
> Laboratoire de Bioimagerie et Pathologies
> UMR 7021 CNRS - Université de Strasbourg
> Faculté de Pharmacie
> 74 route du Rhin
> 67401 ILLKIRCH
> Tel : +33(0)3 68 85 41 84
>
> ----- Mail original -----
> De: "Ondřej Šebesta" <
[hidden email]>
> À: "imagej" <
[hidden email]>
> Envoyé: Lundi 28 Octobre 2019 11:50:52
> Objet: Re: selectWindow does not work
>
> Hi Kefe.
> Despite I do not understand the weird prefix naming, I would like to put
> some intro into naming anyway.
>
> You got this error, because no active image with this name is open. Herbies
> code "hide" the suffix (e.g. .tif), which would be the problem. He has
> split the title into the array "nme" consisting of element 0 = "filename"
> and 1 = ".tif" (suffix). If you want to concatenate this with hard coded
> prefix you have to do it like this:
>
> imgName="c:1/2 - "+nme[0]+nme[1] //in case you want to include suffix
>
> this is equivalent:
> title=getTitle();
> run("Split Channels"); //or whatever split function you use
> selectWindow("C1-"+title); //or whatever suffix you need - just exchange
> "C1-" with "your_preffix". This just should work.
>
> Anyway, more "safe" would be collect resulting images names and use them
> e.g. in array. Here is an example code:
>
>
> //open("/home/schebique/Obrázky/A1/confocal-series.tif");
> run("Confocal Series (2.2MB)");
> nI_pre=nImages; //actual number of opened image windows
>
> run("Split Channels"); //splitting channels resulting in
> C1-confocal-series.tif etc.
> nI_post=nImages; //number of images after splitting
> newImagesCount=nI_post - nI_pre +1; //+1 because original was closed, but
> we have one image more after split
> img=newArray(newImagesCount); //new array where we will collect image
> titles
> count=0; //counter for the array index
> for (n=nI_pre; n<=nI_post; n++) { //loop through desired images
> selectImage(n); //selecting image
> img[count]=getTitle(); //getting title into the array
> count++; //index counter increment
> }
>
> //loop for printing
> for (a=0; a<img.length; a++) {
> print(img[a]);
> }
> //direct selecti of new channel images
> selectWindow(img[0]); //select C1
> selectWindow(img[1]); //select C2
> //example how to copy into the parameter:
> C1=img[0]; //params could be more intuitive furthur in the code
> C2=img[1];
> //loop for close new windows only
> for (a=0; a<img.length; a++) {
> selectImage(img[a]);
> close();
> }
>
> Just to be complete I usualy use a little different way to separate name
> from .tif suffix:
> title=getTitle();
> name=replace(title, ".tif", "");
> print(title+"\n"+name);
>
> Hopefully you can find some inspiration.
> Best Ondrej
>
>
>
> po 28. 10. 2019 v 8:49 odesílatel kefe <
[hidden email]>
> napsal:
>
> > unfortunately not
> > I get the following errors:
> >
> > Error: "c:2/3 - 191024_xxx" not found in line 8
> > selectImage ( "c:2/3 - " + nme [ 0 <]> ) ;
> >
> >
> > Since I do not understand what exactly you do with those 3 lines I dont
> > know
> > what this error means.
> > (Sorry I am a total newbie to writing anything)
> >
> >
> >
> > --
> > Sent from:
http://imagej.1557.x6.nabble.com/> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >
>
>
> --
> Mgr. Ondřej Šebesta
> Laboratory of Confocal and Fluorescence Microscopy
> Faculty of Science, Charles University in Prague
> Vinicna 7
> 128 44 Prague
> Czech Republic
>
> Phone: +420 2 2195 1061
> e-mail:
[hidden email]
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>