Re: Does IMAGEJ have a watershed segmentation function similar with the marker based watershed segmentation in Avizo

Posted by Michael Schmid on Nov 26, 2019; 1:53pm
URL: http://imagej.273.s1.nabble.com/Does-IMAGEJ-have-a-watershed-segmentation-function-similar-with-the-marker-based-watershed-segmentato-tp5022707p5022712.html

Hi Yongqiang,

The Process>Find Maxima command also has an option for "Segmented
particles", which is a very basic watershed.

So, if the seeds you need for the watershed can be obtained with "Find
Maxima", you can try this function. You will need to adjust the
"prominence" (named "tolerance in older ImageJ versions) to suppress
small maxima.


Michael
________________________________________________________________
On 26.11.19 11:48, Yongqiang Chen wrote:

> Hi ImageJ experts,
>
> I want to know that if ImageJ has a watershed segmentation function similar with the marker-based watershed segmentation in Avizo?
>
> I tried the watershed segmentation in the MorphoLibJ, but the results are not as good as the watershed in Avizo.
>
> Please give me some guidance.
>
> Regards,
> Yongqiang
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html