Re: Does IMAGEJ have a watershed segmentation function similar with the marker based watershed segmentation in Avizo

Posted by Yongqiang Chen on Nov 26, 2019; 2:02pm
URL: http://imagej.273.s1.nabble.com/Does-IMAGEJ-have-a-watershed-segmentation-function-similar-with-the-marker-based-watershed-segmentato-tp5022707p5022713.html

Hi Michael,

Thank you for your help. Really appreciate it.

Regards,
Yongqiang

-----Original Message-----
From: Michael Schmid <[hidden email]>
Sent: Tuesday, November 26, 2019 1:54 PM
To: [hidden email]
Subject: Re: Does IMAGEJ have a watershed segmentation function similar with the marker based watershed segmentation in Avizo

Hi Yongqiang,

The Process>Find Maxima command also has an option for "Segmented particles", which is a very basic watershed.

So, if the seeds you need for the watershed can be obtained with "Find Maxima", you can try this function. You will need to adjust the "prominence" (named "tolerance in older ImageJ versions) to suppress small maxima.


Michael
________________________________________________________________
On 26.11.19 11:48, Yongqiang Chen wrote:

> Hi ImageJ experts,
>
> I want to know that if ImageJ has a watershed segmentation function similar with the marker-based watershed segmentation in Avizo?
>
> I tried the watershed segmentation in the MorphoLibJ, but the results are not as good as the watershed in Avizo.
>
> Please give me some guidance.
>
> Regards,
> Yongqiang
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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