Posted by
Fred Damen on
Feb 03, 2020; 9:33pm
URL: http://imagej.273.s1.nabble.com/T2-computation-tp5022909p5022913.html
Greetings Gonzalo,
I have not used the plugin that you had mentioned, albeit, I suspect it
will work for your purpose. Here is a pitch for a couple of plugins that
I have written for this generic purpose. DICOM_open will open a
multivolume DICOM dataset and sort them into a hyperstack with the slice
label set to the variable/value describing the frame dimension. And
F_Projector, which will process the data voxelwise through the frame
dimension. In your case, you would want the 'Fit: Exponential'.
Note: I have tested DICOM_open extensively for multi b-value, not DTI,
datasets. I do not have a multi variable/TE dataset to test with though.
If you try it, I would be grateful for feedback.
Note: even if you don't use these plugin, but you are playing with DICOM
dataset, heed the warning in the third paragraph of DICOM_open wiki page.
Enjoy,
Fred
https://imagejdocu.tudor.lu/plugin/inputoutput/dicom_open/starthttps://imagejdocu.tudor.lu/plugin/stacks/frame_projector/startOn Mon, February 3, 2020 2:53 pm, Gonzalo Rojas Costa wrote:
> Hi Fred:
>
> For T2* mapping I mean T2 mapping for gradient echo sequence...
>
> Sincerely,
>
>
> Gonzalo Rojas Costa
>
>
> El lun., 3 de febrero de 2020 21:06, Fred Damen <
[hidden email]>
> escribió:
>
>> Greetings,
>>
>> It depends on what exactly what you mean by T2* mapping?
>>
>> If you are referring to determining the time constant then the same post
>> processing plugin will work. 1/T2* = 1/T2 + 1/T2'; A spin echo pulse
>> sequence eliminates, i.e, reduces to negligible level, the T2' component
>> leaving just the T2 component. A gradient echo sequence includes the
>> T2'
>> component.
>>
>> If you are referring to creating deltaB0 map, then you need to do a
>> linear
>> fit to the phase image, albeit with special handling of the phase wrap.
>> I
>> have a plugin for this. (I have not yet dressed the code up for release
>> though)
>>
>> If you are referring to Susceptibility Weighted Imaging, I do not know
>> of
>> a ImageJ plugin, albeit there are other tools out there.
>>
>> Enjoy,
>>
>> Fred
>>
>> On Mon, February 3, 2020 12:44 pm, Gonzalo Rojas Costa wrote:
>> > Hi:
>> >
>> > Which plugin computes T2* mapping ?.. Because "MRI Analysis
>> Calculator
>> > v1.0" only computes T2 mapping...
>> >
>> > Sincerely,
>> >
>> >
>> > Gonzalo Rojas Costa
>> > Chair LABMAN (OHBM)
>> >
>> > Laboratory for Advanced Medical Image Processing
>> > Department of Radiology
>> > Health Innovation Center
>> > ClÃnica las Condes
>> > Lo Fontecilla 441, Las Condes, Santiago, Chile.
>> > Tel: 56-2-2105170
>> > Cel: 56-9-97771785
>> >
http://www.aribrain.info>> >
https://scholar.google.com/citations?user=LO7LZ3oAAAAJ>> >
https://www.researchgate.net/profile/Gonzalo_Rojas2>> >
http://www.researcherid.com/rid/B-2036-2013>> >
https://cl.linkedin.com/in/gonzalorojascosta>> >
>> > --
>> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>> >
>>
>> --
>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>
>
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