Posted by
Michael Elbaum on
Feb 05, 2020; 6:04am
URL: http://imagej.273.s1.nabble.com/java-complaints-in-headless-mode-tp5022919.html
Hi all,
I'm running a simple macro to apply a Fourier-space filter to every slice in a stack. It runs quietly in the regular GUI mode. When I run headless there is a complaint about number formats. The sore point is in passing an integer parameter (pixel count) into a function using the ¶m syntax. The parameter is an integer, but it seems as if java expects a float. The error is unpleasant but not fatal. Any thoughts how to fix?
regards,
Michael
java.lang.NumberFormatException: For input string: "&fftwidth"
at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:2043)
at sun.misc.FloatingDecimal.parseDouble(FloatingDecimal.java:110)
at java.lang.Double.parseDouble(Double.java:538)
at net.imagej.patcher.HeadlessGenericDialog.getMacroParameter(HeadlessGenericDialog.java:348)
at net.imagej.patcher.HeadlessGenericDialog.addNumericField(HeadlessGenericDialog.java:128)
at ij.plugin.SpecifyROI.showDialog(SpecifyROI.java:107)
at ij.plugin.SpecifyROI.run(SpecifyROI.java:80)
at ij.IJ.runPlugIn(IJ.java:199)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at ij.IJ.run(IJ.java:312)
at ij.IJ.run(IJ.java:323)
at ij.macro.Functions.doRun(Functions.java:624)
at ij.macro.Functions.doFunction(Functions.java:97)
at ij.macro.Interpreter.doStatement(Interpreter.java:275)
at ij.macro.Interpreter.doBlock(Interpreter.java:671)
at ij.macro.Interpreter.doStatement(Interpreter.java:320)
at ij.macro.Interpreter.doFor(Interpreter.java:593)
at ij.macro.Interpreter.doStatement(Interpreter.java:302)
at ij.macro.Interpreter.doStatements(Interpreter.java:261)
at ij.macro.Interpreter.run(Interpreter.java:157)
at ij.macro.Interpreter.run(Interpreter.java:91)
at ij.macro.Interpreter.run(Interpreter.java:102)
at ij.plugin.Macro_Runner.runMacro(Macro_Runner.java:161)
at ij.plugin.Macro_Runner.runMacroFile(Macro_Runner.java:145)
at ij.IJ.runMacroFile(IJ.java:160)
at net.imagej.legacy.IJ1Helper$4.call(IJ1Helper.java:1125)
at net.imagej.legacy.IJ1Helper$4.call(IJ1Helper.java:1121)
at net.imagej.legacy.IJ1Helper.runMacroFriendly(IJ1Helper.java:1055)
at net.imagej.legacy.IJ1Helper.runMacroFile(IJ1Helper.java:1121)
at net.imagej.legacy.LegacyCommandline$Macro.handle(LegacyCommandline.java:187)
at org.scijava.console.DefaultConsoleService.processArgs(DefaultConsoleService.java:102)
at org.scijava.AbstractGateway.launch(AbstractGateway.java:97)
at net.imagej.Main.main(Main.java:55)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at net.imagej.launcher.ClassLauncher.launch(ClassLauncher.java:279)
at net.imagej.launcher.ClassLauncher.run(ClassLauncher.java:186)
at net.imagej.launcher.ClassLauncher.main(ClassLauncher.java:77)
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