Re: Specifying a predetermined ROI

Posted by Abdulhameed Bakreen on
URL: http://imagej.273.s1.nabble.com/Specifying-a-predetermined-ROI-tp5023001p5023008.html

Hi Herbie,

Please find attached a ''.png'' format of the sample image. The image was scanned and originally saved in a ''.ndpi'' format, after which I scaled it and saved it as ''.tif'' (too big to send) and then finally as ''.png''. Hope this is OK!

P.S. I went through the thread you provided and I tried your macro. I believe that's what I've been looking for. Could you please clarify few things for me, e.g. should the macro for the perilesional area be run before or after highlighting the lesion; should the highlighted lesion be enclosed or is just a straight line across the lesion border enough; how do I make sure that only the perilesional area is being analyzed; and what happens if I have more than 1 perilesional areas for 1 sample image?

Please forgive my ignorance here, I'm pretty new to ImageJ. I really appreciate your immense assistance.

Best regards,
Abdul

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