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Re: 3d registration across multiple stacks

Posted by aget on Apr 01, 2020; 4:06pm
URL: http://imagej.273.s1.nabble.com/3d-registration-across-multiple-stacks-tp5023110p5023137.html

Thank you Mike, that's very helpful. I posted a question in the forum. Also
opened some examples, and realized that this software cannot visualize
output, right? so we have to use Paraview?

On Wed, Apr 1, 2020 at 10:51 AM mike chapman <[hidden email]>
wrote:

> There is a webinar introduction from a few years ago posted on youtube (
> https://www.youtube.com/watch?v=CIYC1nPWb-g <
> https://www.youtube.com/watch?v=CIYC1nPWb-g>) which would be a good place
> to start that highlights how to use the software (there is a demo of using
> the software in the second half).
>
> There are some example pipelines if you go under bookmarks>prebuilt
> pipelines>Examples inside the gui
>
> There is also a forum (
> https://groups.google.com/forum/#!forum/dream3d-users <
> https://groups.google.com/forum/#!forum/dream3d-users>) which may be
> useful.  Mike Jackson (the lead on the software) is very responsive on the
> forum.
>
> Mike
>
> > On Apr 1, 2020, at 10:32 AM, aget liang <[hidden email]> wrote:
> >
> > Thanks Mike, I have installed the Dream.3D, but found it hard to start
> > with. The tutorial does not tell much about its use. Any suggestions
> about
> > where to find learning materials? Thank you!
> >
> > On Tue, Mar 31, 2020 at 10:56 AM mike chapman <[hidden email]
> <mailto:[hidden email]>>
> > wrote:
> >
> >> For registering multiple 3D stacks, I use another free program called
> >> Dream.3D (http://dream3d.bluequartz.net <http://dream3d.bluequartz.net/>
> <http://dream3d.bluequartz.net/ <http://dream3d.bluequartz.net/>>).
> >> I haven’t had much luck trying to do these types of registrations
> inside of
> >> ImageJ.
> >>
> >> Mike
> >>
> >>> On Mar 30, 2020, at 2:43 PM, Yajie Liang <[hidden email]> wrote:
> >>>
> >>> Thanks Mike for your reply. I may not describe the problem clear. The
> >> question is to register one 3d stack to another 3d stack, instead of
> >> registering the slices in one stack. Also need to extract the
> >> transformation for each slice in a stack. Any idea any plugin for this
> >> purpose? Thanks!
> >>>
> >>> --
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> >>
> >>
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> >>
> >
> >
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