http://imagej.273.s1.nabble.com/3d-registration-across-multiple-stacks-tp5023110p5023143.html
>) I believe that it can multidimensional registrations, but I have never pushed it past 2D.
> On Apr 1, 2020, at 2:00 PM, aget liang <
[hidden email]> wrote:
>
> Got it, will dig it more; but in the meantime, I found "Correct 3D drift"
> plugin of ImageJ could do nice 4D registration, though it only addresses
> translation at xy plane.
>
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166950/>
> On Wed, Apr 1, 2020 at 12:26 PM mike chapman <
[hidden email]>
> wrote:
>
>> That is correct. All of the visualizations that I make using Dream3D are
>> done in Paraview.
>>
>> Mike
>>
>>> On Apr 1, 2020, at 12:06 PM, aget liang <
[hidden email]> wrote:
>>>
>>> Thank you Mike, that's very helpful. I posted a question in the forum.
>> Also
>>> opened some examples, and realized that this software cannot visualize
>>> output, right? so we have to use Paraview?
>>>
>>> On Wed, Apr 1, 2020 at 10:51 AM mike chapman <
[hidden email]>
>>> wrote:
>>>
>>>> There is a webinar introduction from a few years ago posted on youtube (
>>>>
https://www.youtube.com/watch?v=CIYC1nPWb-g <
>>>>
https://www.youtube.com/watch?v=CIYC1nPWb-g>) which would be a good
>> place
>>>> to start that highlights how to use the software (there is a demo of
>> using
>>>> the software in the second half).
>>>>
>>>> There are some example pipelines if you go under bookmarks>prebuilt
>>>> pipelines>Examples inside the gui
>>>>
>>>> There is also a forum (
>>>>
https://groups.google.com/forum/#!forum/dream3d-users <
>>>>
https://groups.google.com/forum/#!forum/dream3d-users>) which may be
>>>> useful. Mike Jackson (the lead on the software) is very responsive on
>> the
>>>> forum.
>>>>
>>>> Mike
>>>>
>>>>> On Apr 1, 2020, at 10:32 AM, aget liang <
[hidden email]> wrote:
>>>>>
>>>>> Thanks Mike, I have installed the Dream.3D, but found it hard to start
>>>>> with. The tutorial does not tell much about its use. Any suggestions
>>>> about
>>>>> where to find learning materials? Thank you!
>>>>>
>>>>> On Tue, Mar 31, 2020 at 10:56 AM mike chapman <
[hidden email]
>>>> <mailto:
[hidden email]>>
>>>>> wrote:
>>>>>
>>>>>> For registering multiple 3D stacks, I use another free program called
>>>>>> Dream.3D (
http://dream3d.bluequartz.net <
>>
http://dream3d.bluequartz.net/>
>>>> <
http://dream3d.bluequartz.net/ <
http://dream3d.bluequartz.net/>>).
>>>>>> I haven’t had much luck trying to do these types of registrations
>>>> inside of
>>>>>> ImageJ.
>>>>>>
>>>>>> Mike
>>>>>>
>>>>>>> On Mar 30, 2020, at 2:43 PM, Yajie Liang <
[hidden email]>
>> wrote:
>>>>>>>
>>>>>>> Thanks Mike for your reply. I may not describe the problem clear. The
>>>>>> question is to register one 3d stack to another 3d stack, instead of
>>>>>> registering the slices in one stack. Also need to extract the
>>>>>> transformation for each slice in a stack. Any idea any plugin for this
>>>>>> purpose? Thanks!
>>>>>>>
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>>>>
http://imagej.nih.gov/ij/list.html>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Truth Shall Make You Free
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>>>>
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>>>>
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>>>
>>>
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>
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