http://imagej.273.s1.nabble.com/3d-registration-across-multiple-stacks-tp5023110p5023170.html
Hi Mike, get some updates on this question: I have figured out that Correct
3D drift could correct shifts along xy or z. now it works fine. I should
> It might also be worth looking into BigStitcher (
>
https://imagej.net/BigStitcher <
https://imagej.net/BigStitcher>) I
> believe that it can multidimensional registrations, but I have never pushed
> it past 2D.
>
> Mike
>
> > On Apr 1, 2020, at 2:00 PM, aget liang <
[hidden email]> wrote:
> >
> > Got it, will dig it more; but in the meantime, I found "Correct 3D drift"
> > plugin of ImageJ could do nice 4D registration, though it only addresses
> > translation at xy plane.
> >
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166950/> >
> > On Wed, Apr 1, 2020 at 12:26 PM mike chapman <
[hidden email]>
> > wrote:
> >
> >> That is correct. All of the visualizations that I make using Dream3D
> are
> >> done in Paraview.
> >>
> >> Mike
> >>
> >>> On Apr 1, 2020, at 12:06 PM, aget liang <
[hidden email]> wrote:
> >>>
> >>> Thank you Mike, that's very helpful. I posted a question in the forum.
> >> Also
> >>> opened some examples, and realized that this software cannot visualize
> >>> output, right? so we have to use Paraview?
> >>>
> >>> On Wed, Apr 1, 2020 at 10:51 AM mike chapman <
[hidden email]>
> >>> wrote:
> >>>
> >>>> There is a webinar introduction from a few years ago posted on
> youtube (
> >>>>
https://www.youtube.com/watch?v=CIYC1nPWb-g <
> >>>>
https://www.youtube.com/watch?v=CIYC1nPWb-g>) which would be a good
> >> place
> >>>> to start that highlights how to use the software (there is a demo of
> >> using
> >>>> the software in the second half).
> >>>>
> >>>> There are some example pipelines if you go under bookmarks>prebuilt
> >>>> pipelines>Examples inside the gui
> >>>>
> >>>> There is also a forum (
> >>>>
https://groups.google.com/forum/#!forum/dream3d-users <
> >>>>
https://groups.google.com/forum/#!forum/dream3d-users>) which may be
> >>>> useful. Mike Jackson (the lead on the software) is very responsive on
> >> the
> >>>> forum.
> >>>>
> >>>> Mike
> >>>>
> >>>>> On Apr 1, 2020, at 10:32 AM, aget liang <
[hidden email]> wrote:
> >>>>>
> >>>>> Thanks Mike, I have installed the Dream.3D, but found it hard to
> start
> >>>>> with. The tutorial does not tell much about its use. Any suggestions
> >>>> about
> >>>>> where to find learning materials? Thank you!
> >>>>>
> >>>>> On Tue, Mar 31, 2020 at 10:56 AM mike chapman <
>
[hidden email]
> >>>> <mailto:
[hidden email]>>
> >>>>> wrote:
> >>>>>
> >>>>>> For registering multiple 3D stacks, I use another free program
> called
> >>>>>> Dream.3D (
http://dream3d.bluequartz.net <
> >>
http://dream3d.bluequartz.net/>
> >>>> <
http://dream3d.bluequartz.net/ <
http://dream3d.bluequartz.net/>>).
> >>>>>> I haven’t had much luck trying to do these types of registrations
> >>>> inside of
> >>>>>> ImageJ.
> >>>>>>
> >>>>>> Mike
> >>>>>>
> >>>>>>> On Mar 30, 2020, at 2:43 PM, Yajie Liang <
[hidden email]>
> >> wrote:
> >>>>>>>
> >>>>>>> Thanks Mike for your reply. I may not describe the problem clear.
> The
> >>>>>> question is to register one 3d stack to another 3d stack, instead of
> >>>>>> registering the slices in one stack. Also need to extract the
> >>>>>> transformation for each slice in a stack. Any idea any plugin for
> this
> >>>>>> purpose? Thanks!
> >>>>>>>
> >>>>>>> --
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http://imagej.nih.gov/ij/list.html> >>>>>>
> >>>>>>
> >>>>>> --
> >>>>>> ImageJ mailing list:
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> >>>>
http://imagej.nih.gov/ij/list.html>
> >>>>>>
> >>>>>
> >>>>>
> >>>>> --
> >>>>> Truth Shall Make You Free
> >>>>>
> >>>>> --
> >>>>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html <
> >>>>
http://imagej.nih.gov/ij/list.html>
> >>>>
> >>>> --
> >>>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >>>>
> >>>
> >>>
> >>> --
> >>> Truth Shall Make You Free
> >>>
> >>> --
> >>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >>
> >> --
> >> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >>
> >
> >
> > --
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> >
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>
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