ROI Manager headless mode (can't use overlays)

Posted by Luiza on
URL: http://imagej.273.s1.nabble.com/ROI-Manager-headless-mode-can-t-use-overlays-tp5023318.html

Hello!

I wrote an ImageJ macro to do some nuclei analisys and I can't use the
headless mode due to the ROI Manager.
I searched a lot and the main answer is to use the overlays. My main problem
is that you can not "split" a composite overlay (like we do in ROI Manager).
I also couldn't split the selection, before converting it to the overlays.

[My images have the selection of several nuclei and this selection is made
automatically with edit>selection>create selection. So, my image has a
composite selection of several "oval-like" poligons and I don't know how to
split it. With the ROI Manager I would add this selection to the ROI and
then split them]

Thank you everybody!



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