Re: Please help creating a macro for Z project and save as .tif

Posted by patriciody on May 30, 2020; 12:19pm
URL: http://imagej.273.s1.nabble.com/Please-help-creating-a-macro-for-Z-project-and-save-as-tif-tp5023384p5023421.html

Hi Kees! somebody answered via email this:

I tried to send this directly to the listserv... but.. it got rejected...
:-(
If your path has any spaces in it, you'll need to enclose it in brackets:
        run ( "Bio-Formats Importer" , "open=[" + path + "] autoscale
color_mode=D....



This worked :D. Now it works perfectly, the only problem is that it gives me
2 .tif files containing both channels inside. Instead of 2 files with 1
channel each.

Also, is it possible to add the function of adjust brigthness/contrast auto
to channel 1 after the z stacks are joinend? or to both channels if it is
not possible

Thank you so much for your help!



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