Posted by
Cammer, Michael-3 on
URL: http://imagej.273.s1.nabble.com/remote-access-to-ImageJ-tp5023690p5023693.html
After the covid shutdown we quickly threw together a course on image analysis and ImageJ. Initially, approximately 200 students reported that they were able to get ImageJ up-and-running. A handful needed a little more help, typically because they did not read the instructions carefully, but following these guidelines, which were followed by instructions on setting options for memory etc, they reported all was working. BTW, teaching ImageJ by screen-sharing and demonstrating over Zoom worked really well. We solicited data from trainees and this was great.
Cheers-
Michael
Unless you have full administrative permissions, do not install in the Programs Files directory or Applications (on Mac). Also, recommend do not install on desktop, especially if your computer has a home drive on a network.
Recommended: install in your documents folder. If you are on a network, make sure this is the local documents folder.
Installation is just copying a folder containing a bunch of files to your computer. It's this simple. You can even keep it on a USB key and run it anywhere.
To install
Fiji: Just go here
http://fiji.sc/ and download.
Then follow instructions below for updating, setting memory, and setting up additional macro &/or plugins commands.
or
ImageJ: Download from
http://rsbweb.nih.gov/ij/download.html.
Install bundled with Java 1.8
If you have problems installing on Mac, please look here<
http://microscopynotes.com/imagej/getting_started/installingOSX/index.html>.
You need to install the LOCI Bio-Formats so that you may open files saved in different formats. The file is named "bioformats_package.jar" and goes in the plugins folder in the ImageJ folder. Get it here
https://www.openmicroscopy.org/bio-formats/downloads/Michael Cammer, Sr Research Scientist, DART Microscopy Laboratory
NYU Langone Health, 540 First Avenue, SK2 Microscopy Suite, New York, NY 10016
[hidden email]<mailto:
[hidden email]>
http://nyulmc.org/micros http://microscopynotes.com/Voice direct only, no text or messages: 1-914-309-3270 and 1-646-501-0567
________________________________
From: Joel Sheffield <
[hidden email]>
Sent: Sunday, July 12, 2020 2:21:50 PM
To:
[hidden email]
Subject: remote access to ImageJ
[EXTERNAL]
Hi All,
I am teaching a Cell Biology course to a class of about 350 juniors and
seniors. As part of the lab component of the course, we use ImageJ for
analysis of images. Normally, ImageJ is loaded onto the computers that the
students use in the labs. However, in the present chaotic situation, we
are teaching our labs online and, as you can imagine, struggling with how
to convey a lab experience to students who are working from home. For
most of them, it should be possible for them to download ImageJ on to their
own computers, but I am concerned that a number of the students may be
uncomfortable with downloading and installation, or may have equipment
issues.
So, I was wondering if there was a way in which students could log into a
central system and use the program remotely. Any suggestions would be
welcome. --
Thank you very much.
Joel
Joel B. Sheffield, Ph.D
Department of Biology
Temple University
Philadelphia, PA 19122
Voice: 215 204 8839
e-mail:
[hidden email]
Office: Biolife 311
URL: *
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--
ImageJ mailing list:
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