Re: Find Maxima ... segmentation (macro issue)

Posted by Christian R.-2 on
URL: http://imagej.273.s1.nabble.com/Find-Maxima-segmentation-macro-issue-tp5023746p5023752.html

Hi Gabriel,

Thanks for asking for the short macro - that helped me find the culprit:

I found a rogue "run("Watershed");" command in my code that would have
virtually no effect on the segmentation of the nuclei (round particles,
constant count), but that would have a dramatic effect on the segmentation
of the cytosol (irregularly shaped particles, count varying by threshold).

After having fixed my code, the issue does no longer persist.

Again, thank you very much!!



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